Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   N3Z98_RS04425 Genome accession   NZ_CP104325
Coordinates   848818..849771 (+) Length   317 a.a.
NCBI ID   WP_066776437.1    Uniprot ID   A0A6A7JTP4
Organism   Campylobacter hepaticus strain RBCL71delta     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 843818..854771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N3Z98_RS04395 (N3Z98_04395) - 843991..844386 (-) 396 WP_083074287.1 hypothetical protein -
  N3Z98_RS07785 - 844634..844949 (-) 316 Protein_840 glycosyltransferase family 2 protein -
  N3Z98_RS04405 (N3Z98_04405) - 844946..845890 (-) 945 WP_066778115.1 glycosyltransferase family 2 protein -
  N3Z98_RS04410 (N3Z98_04410) - 845957..847072 (+) 1116 WP_116980464.1 glycosyltransferase -
  N3Z98_RS04415 (N3Z98_04415) - 847081..847950 (-) 870 WP_116980463.1 glycosyltransferase -
  N3Z98_RS04420 (N3Z98_04420) - 847934..848758 (-) 825 WP_196913990.1 glycosyltransferase family 2 protein -
  N3Z98_RS04425 (N3Z98_04425) waaF 848818..849771 (+) 954 WP_066776437.1 lipopolysaccharide heptosyltransferase II Regulator
  N3Z98_RS04430 (N3Z98_04430) - 849897..850787 (+) 891 WP_066776435.1 alpha-2,3-sialyltransferase -
  N3Z98_RS04435 (N3Z98_04435) - 850784..851824 (+) 1041 WP_066776433.1 N-acetylneuraminate synthase family protein -
  N3Z98_RS04440 (N3Z98_04440) neuC 851821..852936 (+) 1116 WP_066776431.1 UDP-N-acetylglucosamine 2-epimerase -
  N3Z98_RS04445 (N3Z98_04445) - 853000..853668 (+) 669 WP_066776429.1 cytidylyltransferase domain-containing protein -
  N3Z98_RS04450 (N3Z98_04450) gmhA 853767..854327 (-) 561 WP_066776426.1 D-sedoheptulose 7-phosphate isomerase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 36233.96 Da        Isoelectric Point: 10.3716

>NTDB_id=728624 N3Z98_RS04425 WP_066776437.1 848818..849771(+) (waaF) [Campylobacter hepaticus strain RBCL71delta]
MKILIHLPTWLGDAVMASSALYGILNHFKNAHFILYGSFASTALFKEFPNAQIIIENRKTRYKQALILRNQLGKIDLGIS
FKSAFSSKIILHIFKIQQRFFFNKYKFKEEHQVLKYLYFIENSLSCKIDSKQLQLPFKLKSKAPLVLKNGKKILGLNPGA
HFGSAKRWDANYFATVALNFAKTHEILIFGAGKTEQELCDKIASILQKSNIKVKNLCNKTSIKRLCQNIAFCDIFITNDS
GPMHISAAYKIKTVAIFGPTKFTQTSPWQNENAKLVHLNLDCMPCMQKICPLKHHKCMQDLKPQMVIEEVKKLISIF

Nucleotide


Download         Length: 954 bp        

>NTDB_id=728624 N3Z98_RS04425 WP_066776437.1 848818..849771(+) (waaF) [Campylobacter hepaticus strain RBCL71delta]
ATGAAAATTCTTATTCATCTTCCAACTTGGCTAGGTGATGCAGTTATGGCTTCATCGGCTTTATATGGTATTTTAAATCA
TTTTAAAAATGCACACTTTATCCTTTATGGATCTTTTGCTTCAACAGCATTGTTTAAAGAATTTCCTAATGCACAAATTA
TAATAGAAAATAGAAAAACACGCTACAAACAAGCTTTAATTTTACGTAATCAACTTGGCAAAATTGATCTTGGTATTTCT
TTTAAATCAGCCTTTTCTTCTAAAATCATTTTACATATTTTTAAAATACAACAAAGATTTTTTTTCAATAAATACAAATT
TAAAGAAGAGCATCAAGTTTTAAAATATCTTTATTTTATAGAAAATTCACTCTCTTGTAAAATTGATTCTAAACAATTAC
AACTTCCTTTTAAATTAAAATCTAAAGCTCCTCTTGTATTAAAAAATGGTAAAAAAATTTTAGGTTTAAATCCAGGTGCA
CATTTTGGAAGCGCGAAAAGATGGGATGCAAATTATTTTGCAACAGTAGCTTTAAATTTTGCCAAAACACATGAAATTTT
AATCTTTGGCGCAGGAAAAACTGAGCAAGAACTTTGTGATAAAATTGCTAGTATTTTACAAAAATCAAATATCAAGGTTA
AAAATCTTTGCAATAAAACTAGCATTAAAAGACTTTGTCAAAATATAGCTTTTTGTGATATTTTTATCACTAATGATAGC
GGTCCTATGCACATTAGTGCTGCATATAAAATTAAAACCGTAGCTATTTTTGGCCCAACAAAATTTACCCAAACCTCACC
CTGGCAAAATGAAAATGCTAAATTAGTACATCTTAATCTTGATTGCATGCCTTGTATGCAAAAAATTTGCCCTTTAAAAC
ATCACAAATGTATGCAAGATTTAAAACCTCAAATGGTTATAGAAGAAGTTAAAAAATTAATTTCTATTTTTTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(102-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A7JTP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

77.707

99.054

0.77