Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   N3Z98_RS02340 Genome accession   NZ_CP104325
Coordinates   432446..432880 (+) Length   144 a.a.
NCBI ID   WP_066776745.1    Uniprot ID   A0A424Z019
Organism   Campylobacter hepaticus strain RBCL71delta     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 427446..437880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N3Z98_RS02315 (N3Z98_02315) lptB 427833..428561 (+) 729 WP_066776859.1 LPS export ABC transporter ATP-binding protein -
  N3Z98_RS02320 (N3Z98_02320) - 428561..429811 (+) 1251 WP_066776734.1 RNA polymerase factor sigma-54 -
  N3Z98_RS02325 (N3Z98_02325) uvrB 429852..431825 (-) 1974 WP_066776736.1 excinuclease ABC subunit UvrB -
  N3Z98_RS02330 (N3Z98_02330) - 431987..432217 (+) 231 WP_066776739.1 hypothetical protein -
  N3Z98_RS02335 (N3Z98_02335) - 432207..432449 (+) 243 WP_066776742.1 hypothetical protein -
  N3Z98_RS02340 (N3Z98_02340) Cj0683 432446..432880 (+) 435 WP_066776745.1 type II secretion system protein Machinery gene
  N3Z98_RS02345 (N3Z98_02345) - 432862..434715 (+) 1854 WP_268904716.1 primosomal protein N' -
  N3Z98_RS02350 (N3Z98_02350) - 434726..436130 (-) 1405 Protein_448 DUF2972 domain-containing protein -
  N3Z98_RS02355 (N3Z98_02355) ispG 436287..437357 (+) 1071 WP_066776748.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16972.04 Da        Isoelectric Point: 8.4653

>NTDB_id=728619 N3Z98_RS02340 WP_066776745.1 432446..432880(+) (Cj0683) [Campylobacter hepaticus strain RBCL71delta]
MKKAFTLLELIFVILIIGILTSLSSSFINITKDEVKILKLKTDYEMLNSALTLMRTQMQLKNLDFPSILDHARINHAREK
LFYCNDCGYSLLDTPIYSDFKFWMKIDKNHYSFFLNSKESIKFVYDPKEGLFKCLESFRCKDLI

Nucleotide


Download         Length: 435 bp        

>NTDB_id=728619 N3Z98_RS02340 WP_066776745.1 432446..432880(+) (Cj0683) [Campylobacter hepaticus strain RBCL71delta]
ATGAAAAAAGCATTTACTTTGCTTGAACTTATTTTTGTAATATTAATTATAGGAATTTTAACGAGTTTGTCTTCATCTTT
TATAAATATTACTAAAGATGAAGTAAAAATATTAAAATTAAAAACAGATTATGAAATGTTAAATTCTGCTCTTACTTTAA
TGCGTACTCAAATGCAACTTAAAAATTTAGATTTCCCTAGTATCTTAGATCATGCAAGAATTAACCATGCTAGAGAAAAA
CTTTTTTATTGTAATGATTGTGGATATTCTTTGTTGGATACACCTATTTATTCTGATTTTAAATTTTGGATGAAAATTGA
TAAAAATCATTATAGTTTTTTCTTAAATTCTAAAGAATCGATTAAATTTGTTTATGATCCTAAAGAAGGCTTGTTTAAAT
GTTTGGAAAGTTTTAGATGCAAAGACTTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A424Z019

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

75.862

100

0.764