Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   N2K92_RS17325 Genome accession   NZ_CP104297
Coordinates   3644490..3644816 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain ZHOU     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3639490..3649816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2K92_RS17300 (N2K92_17315) hemC 3640107..3641024 (+) 918 WP_002159654.1 hydroxymethylbilane synthase -
  N2K92_RS17305 (N2K92_17320) - 3641029..3641796 (+) 768 WP_000897410.1 uroporphyrinogen-III synthase -
  N2K92_RS17310 (N2K92_17325) - 3641805..3642644 (+) 840 WP_029424458.1 hypothetical protein -
  N2K92_RS17315 (N2K92_17330) - 3642654..3643847 (+) 1194 WP_045544627.1 membrane protein -
  N2K92_RS17320 (N2K92_17335) - 3643855..3644295 (+) 441 WP_000661569.1 thioesterase family protein -
  N2K92_RS17325 (N2K92_17340) hns 3644490..3644816 (+) 327 WP_000801427.1 H-NS histone family protein Regulator
  N2K92_RS17330 (N2K92_17345) gspN 3645149..3645892 (+) 744 WP_045544626.1 type II secretion system protein N -
  N2K92_RS17335 (N2K92_17350) - 3645892..3646728 (+) 837 WP_045544625.1 type II secretion system protein N -
  N2K92_RS17340 (N2K92_17355) gspD 3646770..3649040 (+) 2271 WP_045544624.1 type II secretion system secretin GspD -
  N2K92_RS17345 (N2K92_17360) - 3649081..3649710 (+) 630 WP_045544623.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=728448 N2K92_RS17325 WP_000801427.1 3644490..3644816(+) (hns) [Acinetobacter baumannii strain ZHOU]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=728448 N2K92_RS17325 WP_000801427.1 3644490..3644816(+) (hns) [Acinetobacter baumannii strain ZHOU]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1