Detailed information NTG0728417

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: N2K92_RS05640
• Genome accession: NZ_CP104297
• Coordinates: 1184841..1185542 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter baumannii strain ZHOU
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1179841..1190542

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N2K92_RS05605 (N2K92_05620)	kdsB	1180364..1181125 (+)	762	WP_045544209.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
N2K92_RS05610 (N2K92_05625)	-	1181137..1182117 (+)	981	WP_045544208.1	DNA polymerase III subunit delta'	-
N2K92_RS05615 (N2K92_05630)	-	1182129..1182470 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
N2K92_RS05620 (N2K92_05635)	-	1182488..1183261 (+)	774	WP_000497298.1	TatD family hydrolase	-
N2K92_RS05625 (N2K92_05640)	-	1183299..1183907 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
N2K92_RS05630 (N2K92_05645)	-	1183917..1184471 (+)	555	WP_000841373.1	type II secretion system protein	-
N2K92_RS05635 (N2K92_05650)	xcpV	1184461..1184841 (+)	381	WP_071210882.1	type II secretion system minor pseudopilin GspI	Machinery gene
N2K92_RS05640 (N2K92_05655)	xcpW	1184841..1185542 (+)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
N2K92_RS05645 (N2K92_05660)	gspK	1185542..1186501 (+)	960	WP_045544206.1	type II secretion system minor pseudopilin GspK	-
N2K92_RS05650 (N2K92_05665)	-	1186731..1187327 (+)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
N2K92_RS05655 (N2K92_05670)	ung	1187378..1188091 (+)	714	WP_001177530.1	uracil-DNA glycosylase	-
N2K92_RS05660 (N2K92_05675)	-	1188088..1189212 (+)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
N2K92_RS05665 (N2K92_05680)	tadA	1189219..1189722 (+)	504	WP_000033177.1	tRNA adenosine(34) deaminase TadA	-
N2K92_RS05670 (N2K92_05685)	-	1189792..1190235 (+)	444	WP_045544205.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=728417 N2K92_RS05640 WP_000594572.1 1184841..1185542(+) (xcpW) [Acinetobacter baumannii strain ZHOU]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=728417 N2K92_RS05640 WP_000594572.1 1184841..1185542(+) (xcpW) [Acinetobacter baumannii strain ZHOU]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATAGATAA
TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991