Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   N4Q44_RS01470 Genome accession   NZ_CP104295
Coordinates   310178..310705 (+) Length   175 a.a.
NCBI ID   WP_071210840.1    Uniprot ID   A0A1S2G0K8
Organism   Acinetobacter baumannii strain DETAB-C9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 305178..315705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4Q44_RS01455 (N4Q44_01455) pilM 307731..308789 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  N4Q44_RS01460 (N4Q44_01460) pilN 308789..309430 (+) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  N4Q44_RS01465 (N4Q44_01465) pilO 309427..310167 (+) 741 WP_049581056.1 type 4a pilus biogenesis protein PilO Machinery gene
  N4Q44_RS01470 (N4Q44_01470) pilP 310178..310705 (+) 528 WP_071210840.1 pilus assembly protein PilP Machinery gene
  N4Q44_RS01475 (N4Q44_01475) pilQ 310773..312938 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  N4Q44_RS01480 (N4Q44_01480) aroK 312950..313519 (+) 570 WP_000643712.1 shikimate kinase AroK -
  N4Q44_RS01485 (N4Q44_01485) aroB 313548..314630 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -
  N4Q44_RS01490 (N4Q44_01490) - 314646..315521 (+) 876 WP_071210841.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19435.68 Da        Isoelectric Point: 8.9898

>NTDB_id=728365 N4Q44_RS01470 WP_071210840.1 310178..310705(+) (pilP) [Acinetobacter baumannii strain DETAB-C9]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYLNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=728365 N4Q44_RS01470 WP_071210840.1 310178..310705(+) (pilP) [Acinetobacter baumannii strain DETAB-C9]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCTGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S2G0K8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

99.429

100

0.994
  comL Acinetobacter baylyi ADP1

71.264

99.429

0.709