Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   P3U45_RS04040 Genome accession   NZ_CP120009
Coordinates   838457..839164 (-) Length   235 a.a.
NCBI ID   WP_029549355.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Dog158     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 833457..844164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U45_RS04010 (P3U45_04010) sufU 834010..834474 (+) 465 WP_001010508.1 Fe-S cluster assembly sulfur transfer protein SufU -
  P3U45_RS04015 (P3U45_04015) sufB 834625..836022 (+) 1398 WP_001074405.1 Fe-S cluster assembly protein SufB -
  P3U45_RS04020 (P3U45_04020) - 836090..837139 (-) 1050 WP_001145730.1 tyrosine-type recombinase/integrase -
  P3U45_RS04025 (P3U45_04025) - 837336..838040 (-) 705 WP_017804779.1 type II toxin-antitoxin system PemK/MazF family toxin -
  P3U45_RS04030 (P3U45_04030) - 838076..838261 (-) 186 WP_070005151.1 hypothetical protein -
  P3U45_RS04035 (P3U45_04035) - 838311..838445 (-) 135 WP_255777535.1 hypothetical protein -
  P3U45_RS04040 (P3U45_04040) irvR 838457..839164 (-) 708 WP_029549355.1 helix-turn-helix domain-containing protein Regulator
  P3U45_RS04045 (P3U45_04045) - 839335..839574 (+) 240 WP_070005150.1 helix-turn-helix transcriptional regulator -
  P3U45_RS04050 (P3U45_04050) - 839711..839893 (-) 183 WP_029549357.1 hypothetical protein -
  P3U45_RS04055 (P3U45_04055) - 840333..840518 (+) 186 WP_000933365.1 helix-turn-helix domain-containing protein -
  P3U45_RS04060 (P3U45_04060) - 840520..841269 (+) 750 WP_031883511.1 phage antirepressor KilAC domain-containing protein -
  P3U45_RS04065 (P3U45_04065) - 841285..841488 (+) 204 Protein_787 hypothetical protein -
  P3U45_RS04070 (P3U45_04070) - 841456..841701 (-) 246 WP_000122246.1 hypothetical protein -
  P3U45_RS04075 (P3U45_04075) - 841772..841993 (+) 222 WP_000594790.1 hypothetical protein -
  P3U45_RS04080 (P3U45_04080) - 841986..842147 (+) 162 WP_000066011.1 DUF1270 domain-containing protein -
  P3U45_RS04085 (P3U45_04085) - 842237..842554 (+) 318 WP_000829610.1 hypothetical protein -
  P3U45_RS04090 (P3U45_04090) - 842559..842819 (+) 261 WP_001556704.1 DUF1108 family protein -
  P3U45_RS04095 (P3U45_04095) - 842829..843050 (+) 222 WP_000815401.1 DUF2483 family protein -
  P3U45_RS04100 (P3U45_04100) - 843043..843666 (+) 624 WP_000139720.1 DUF1071 domain-containing protein -
  P3U45_RS04105 (P3U45_04105) ssb 843666..844091 (+) 426 WP_000934780.1 single-stranded DNA-binding protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26711.35 Da        Isoelectric Point: 5.4096

>NTDB_id=728348 P3U45_RS04040 WP_029549355.1 838457..839164(-) (irvR) [Staphylococcus aureus strain Dog158]
MSSFSSNLERLMNKRDMSDSELAELVDVNRTTVTRWRKGIRSPKLDKLPEIANVFGVKPLDLIHEMDDSKVIEEIHNISS
QLTPPRQSNVLNYANSQLDEQNSKGDNVVDINSYKQDKTPVNVNGCVSAGVGERLHDETLFTEMVKGPVPPHDLALKVNG
DSMEPMFKNGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKEYRDLHFYRNESVRLVGKVIL

Nucleotide


Download         Length: 708 bp        

>NTDB_id=728348 P3U45_RS04040 WP_029549355.1 838457..839164(-) (irvR) [Staphylococcus aureus strain Dog158]
ATGAGTTCATTTTCTTCGAATCTGGAACGTCTGATGAACAAAAGAGATATGAGTGATAGTGAATTAGCAGAATTGGTAGA
TGTTAACCGAACAACAGTCACAAGATGGAGGAAAGGTATCAGAAGTCCAAAACTAGACAAACTACCTGAAATAGCTAATG
TTTTTGGAGTTAAACCCTTAGATTTGATACATGAAATGGATGATTCGAAAGTTATTGAAGAAATTCATAACATATCATCT
CAACTCACACCTCCGCGACAAAGCAATGTACTAAACTACGCAAATAGTCAGTTAGATGAACAAAACTCTAAAGGAGATAA
CGTTGTAGATATTAATTCATATAAACAGGATAAAACTCCGGTTAATGTCAATGGTTGCGTCTCTGCCGGCGTGGGAGAAC
GTCTACACGATGAAACGCTATTCACTGAAATGGTTAAGGGACCTGTGCCACCGCATGATTTAGCATTAAAGGTTAATGGT
GACTCTATGGAACCTATGTTTAAAAATGGAGAAATTATATTTGTAGAGAAAACACACAATATAAAGAATGGTCAGATTGG
TATATTCATCATTGAAGAAGAAGCGTACGTTAAGAAAGTCTTCGTTGAAGATGATAGATTAACTTTAGTTTCACTCAATA
AAGAATACCGCGACCTTCACTTTTATAGGAATGAAAGCGTGAGGTTGGTTGGGAAAGTTATTTTATAG

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(125-234)

Helix-turn-helix (HTH_3)

(8-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

30.742

100

0.37