Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PALA1_RS25960 Genome accession   NZ_CP104254
Coordinates   5465158..5465715 (+) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain PALA1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5460158..5470715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA1_RS25940 (PALA1_05119) pilR 5461434..5462771 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  PALA1_RS25945 (PALA1_05120) thiO 5462817..5463911 (-) 1095 WP_009316267.1 glycine oxidase ThiO -
  PALA1_RS25950 (PALA1_05121) - 5464046..5464555 (+) 510 WP_015503652.1 GspH/FimT family pseudopilin -
  PALA1_RS25955 (PALA1_05122) - 5464661..5465167 (+) 507 WP_003094696.1 GspH/FimT family pseudopilin -
  PALA1_RS25960 (PALA1_05123) pilV 5465158..5465715 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  PALA1_RS25965 (PALA1_05124) pilW 5465712..5466536 (+) 825 WP_023101584.1 type 4a pilus minor pilin PilW -
  PALA1_RS25970 (PALA1_05125) pilX 5466533..5467120 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  PALA1_RS25975 (PALA1_05126) pilY1 5467132..5470623 (+) 3492 WP_021264113.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=728135 PALA1_RS25960 WP_003094697.1 5465158..5465715(+) (pilV) [Pseudomonas aeruginosa strain PALA1]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=728135 PALA1_RS25960 WP_003094697.1 5465158..5465715(+) (pilV) [Pseudomonas aeruginosa strain PALA1]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978