Detailed information NTG0728109

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: NYZ96_RS16885
• Genome accession: NZ_CP104214
• Coordinates: 3760811..3761992 (+)
• Length: 393 a.a.
• NCBI ID: WP_098181562.1
• Uniprot ID: -
• Organism: Burkholderia gladioli strain ZN-S4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3755811..3766992

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NYZ96_RS16855 (NYZ96_16855)	-	3756429..3757043 (+)	615	WP_013699419.1	50S ribosomal protein L25/general stress protein Ctc	-
NYZ96_RS16860 (NYZ96_16860)	pth	3757140..3757745 (+)	606	WP_025097010.1	aminoacyl-tRNA hydrolase	-
NYZ96_RS16865 (NYZ96_16865)	hisC	3757841..3758908 (+)	1068	WP_017918296.1	histidinol-phosphate transaminase	-
NYZ96_RS16870 (NYZ96_16870)	-	3759055..3759327 (-)	273	WP_013699422.1	YfhL family 4Fe-4S dicluster ferredoxin	-
NYZ96_RS16875 (NYZ96_16875)	coaD	3759394..3759894 (-)	501	WP_013699423.1	pantetheine-phosphate adenylyltransferase	-
NYZ96_RS16880 (NYZ96_16880)	rsmD	3760006..3760620 (-)	615	WP_036036218.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
NYZ96_RS16885 (NYZ96_16885)	pilA	3760811..3761992 (+)	1182	WP_098181562.1	signal recognition particle-docking protein FtsY	Machinery gene
NYZ96_RS16890 (NYZ96_16890)	maiA	3762065..3762709 (-)	645	WP_186027606.1	maleylacetoacetate isomerase	-
NYZ96_RS16895 (NYZ96_16895)	ybiB	3762923..3763903 (+)	981	WP_103690647.1	DNA-binding protein YbiB	-
NYZ96_RS16900 (NYZ96_16900)	leuA	3764403..3766055 (+)	1653	WP_260531286.1	2-isopropylmalate synthase	-
NYZ96_RS16905 (NYZ96_16905)	-	3766238..3766624 (-)	387	WP_013699429.1	nuclear transport factor 2 family protein	-

Sequence

Protein

• Length: 393 a.a.
• Molecular weight: 41410.47 Da
• Isoelectric Point: 4.8819

>NTDB_id=728109 NYZ96_RS16885 WP_098181562.1 3760811..3761992(+) (pilA) [Burkholderia gladioli strain ZN-S4]
MFSFFKRLIGSKADGAPTDDQDAPTDRQDDAEAPAAEAPRPVERVAAPTPAPAVPVEPAAPAQVAPALPAAAHEDEAQAV
TAVEIVPPPAPEPAAKKSWIARLRSGLSKTSSSLTSVFVSTKIDEDLYEELETALLMSDAGVDATEYLLGALREKVKAER
LTDPQQVKAALRGLLIALLAPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQL
AIWGERNNVTVVQQESGDPAAVIFDAVGAARARKINVVMADTAGRLPTQLHLMEELRKVKRVIGKAQADAPHEVLLVIDA
NTGQNALAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFNAEEFTDALLG

Nucleotide

• Length: 1182 bp

>NTDB_id=728109 NYZ96_RS16885 WP_098181562.1 3760811..3761992(+) (pilA) [Burkholderia gladioli strain ZN-S4]
ATGTTCAGCTTCTTCAAACGATTGATCGGTTCGAAGGCCGACGGCGCGCCGACCGACGACCAGGACGCGCCGACGGACCG
GCAGGACGACGCCGAGGCGCCCGCGGCCGAAGCGCCCCGGCCCGTCGAGCGGGTCGCCGCGCCGACGCCGGCGCCGGCGG
TTCCGGTCGAGCCGGCCGCGCCCGCGCAAGTCGCCCCTGCTCTCCCCGCCGCCGCGCACGAAGACGAAGCGCAGGCCGTC
ACGGCCGTCGAGATCGTGCCGCCGCCCGCGCCGGAGCCGGCCGCCAAGAAATCCTGGATCGCGCGCCTGCGCTCGGGCCT
GTCGAAGACCAGTTCGAGCCTGACCAGCGTGTTCGTCAGCACCAAGATCGACGAGGATCTCTACGAGGAGCTCGAGACCG
CGCTGCTGATGTCCGACGCCGGCGTCGACGCCACCGAGTACCTGCTCGGCGCGCTGCGCGAGAAGGTCAAGGCCGAGCGG
CTGACCGATCCGCAGCAGGTCAAGGCGGCCCTGCGCGGCCTGCTGATCGCGCTGCTCGCGCCGCTCGAGAAGTCGCTGAT
GCTGGGCCGCGCGCAGCCGCTGGTGATGATGATCGCGGGCGTCAACGGCGCCGGCAAGACCACCAGCATCGGCAAGCTGG
CCAAGCACCTGCAGAGCTTCGACCAGTCGGTGCTGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCGCGCGAGCAGCTC
GCGATCTGGGGCGAGCGCAACAACGTGACGGTGGTGCAGCAGGAAAGCGGCGATCCGGCCGCGGTGATCTTCGACGCGGT
GGGCGCCGCGCGCGCACGCAAGATCAACGTGGTGATGGCCGATACGGCGGGCCGCCTGCCCACCCAGCTGCACCTGATGG
AGGAGCTGCGCAAGGTCAAGCGCGTGATCGGCAAGGCACAGGCCGACGCGCCGCACGAGGTGCTGCTGGTGATCGACGCC
AACACCGGCCAGAACGCGCTCGCCCAGGTAAAGGCCTTCGACGACGCGCTGGGCCTCACCGGCCTGATCGTCACCAAGCT
CGACGGCACCGCGAAAGGCGGCATCCTCGCCGCGATCGCGCGGCAGCGGCCGGTGCCGGTCTACTTCATCGGCGTCGGCG
AGAAGGTGGAGGACCTGCAGCCCTTCAATGCCGAGGAGTTCACCGACGCGCTGCTGGGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (194-392)

• SRP54-type protein, helical bundle domain (SRP54_N) (112-172)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	51.306	100	0.55