Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   NYZ96_RS16790 Genome accession   NZ_CP104214
Coordinates   3744085..3745590 (+) Length   501 a.a.
NCBI ID   WP_186039063.1    Uniprot ID   A0AB38TQU6
Organism   Burkholderia gladioli strain ZN-S4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3739085..3750590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYZ96_RS16765 (NYZ96_16765) kdsD 3740294..3741277 (+) 984 WP_025096995.1 arabinose 5-phosphate isomerase KdsD -
  NYZ96_RS16770 (NYZ96_16770) - 3741277..3741816 (+) 540 WP_013699403.1 HAD family hydrolase -
  NYZ96_RS16775 (NYZ96_16775) lptC 3741820..3742434 (+) 615 WP_017918294.1 LPS export ABC transporter periplasmic protein LptC -
  NYZ96_RS16780 (NYZ96_16780) lptA 3742453..3743121 (+) 669 WP_105859100.1 lipopolysaccharide transport periplasmic protein LptA -
  NYZ96_RS16785 (NYZ96_16785) lptB 3743118..3743894 (+) 777 WP_013699406.1 LPS export ABC transporter ATP-binding protein -
  NYZ96_RS16790 (NYZ96_16790) rpoN/rpoN1 3744085..3745590 (+) 1506 WP_186039063.1 RNA polymerase factor sigma-54 Machinery gene
  NYZ96_RS16795 (NYZ96_16795) hpf 3745740..3746105 (+) 366 WP_013699408.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  NYZ96_RS16800 (NYZ96_16800) - 3746319..3746831 (+) 513 WP_025097001.1 PTS sugar transporter subunit IIA -
  NYZ96_RS16805 (NYZ96_16805) hprK 3746957..3747925 (+) 969 WP_013699410.1 HPr(Ser) kinase/phosphatase -
  NYZ96_RS16810 (NYZ96_16810) rapZ 3748036..3748929 (+) 894 WP_013699411.1 RNase adapter RapZ -
  NYZ96_RS16815 (NYZ96_16815) - 3748962..3749597 (+) 636 WP_013699412.1 LON peptidase substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 55085.04 Da        Isoelectric Point: 4.9483

>NTDB_id=728108 NYZ96_RS16790 WP_186039063.1 3744085..3745590(+) (rpoN/rpoN1) [Burkholderia gladioli strain ZN-S4]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAVAQNPLLENDEWIASPLRVAADGSLIAQSPPSSTPEPMHG
GGSNGSEPSGDRAERDDSRNGDDYDYNADSGDSGQWNLDDYGRSSGASDDDDLPPLQVHEASTSLREHLSAQLRVTQAGP
RDRALVMFLIESLDDDGYLGAGLDEVLTDLPEELEVDLDELGAALALLHSFDPAGVGARSASECLRLQLLRLDPSPTRTL
SLDIVSQHLELLAARDFTRLRKQLKANDDELREAHALIRSLEPFPGAAYGKTEADYVVPDIIVRKSGQNWLAELNPEVVP
KLRINHLYANILRNSRGDPSAGSLKQQLQEARWLIKNIQQRFETILRVAQAIVERQKNFFAHGEIAMRPLVLREIADTLG
LHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDQKSPLSDSRIAELLAEQGFVVAR
RTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=728108 NYZ96_RS16790 WP_186039063.1 3744085..3745590(+) (rpoN/rpoN1) [Burkholderia gladioli strain ZN-S4]
ATGAAAGCCAGCCTCCAACTTCGCCTGTCGCAGCACCTCGCGCTCACGCCCCAGCTCCAGCAGTCGATCCGGCTGCTGCA
GCTGTCGACGCTCGAACTGCAGCAGGAAGTCGCGATGGCCGTCGCCCAGAATCCGCTGCTCGAGAACGACGAATGGATCG
CGAGCCCGCTGCGGGTGGCCGCCGACGGCTCGCTGATCGCGCAGAGCCCGCCCTCCTCGACGCCCGAGCCGATGCACGGT
GGCGGCTCGAACGGCAGCGAACCCTCGGGCGATCGCGCCGAACGCGACGACTCGCGCAATGGCGACGACTACGACTACAA
CGCCGACAGCGGCGATTCGGGTCAGTGGAATCTCGACGACTACGGTCGCTCCTCGGGCGCCTCCGACGACGACGACCTCC
CGCCGCTGCAGGTGCACGAGGCCTCGACCTCGCTGCGCGAGCATCTGTCCGCGCAATTGCGGGTGACCCAGGCGGGTCCG
CGCGACCGCGCGCTGGTGATGTTCCTGATCGAATCGCTCGACGACGACGGTTATCTCGGCGCCGGGCTCGACGAGGTGTT
GACCGACCTGCCCGAGGAACTGGAAGTCGATCTCGACGAACTGGGCGCCGCGCTGGCGCTGCTGCACAGCTTCGACCCGG
CCGGCGTGGGGGCGCGCTCCGCATCGGAATGCTTGCGCCTGCAATTGTTGCGACTCGATCCGTCCCCCACGCGCACGCTG
TCGCTCGACATCGTCTCGCAGCATCTCGAGTTGCTGGCCGCGCGCGACTTCACGCGGCTGCGCAAGCAGTTGAAGGCCAA
CGACGACGAGCTGCGCGAGGCCCATGCACTGATCCGCTCGCTCGAGCCCTTCCCGGGCGCCGCCTACGGCAAGACCGAGG
CGGACTACGTGGTGCCCGACATCATCGTCAGGAAGAGCGGCCAGAACTGGCTCGCGGAGCTCAATCCCGAGGTGGTGCCG
AAGCTGCGCATCAACCACCTGTACGCCAATATCCTGCGCAACAGCCGGGGCGATCCGAGCGCCGGTTCGCTCAAGCAGCA
GCTCCAGGAAGCGCGCTGGCTGATCAAGAATATCCAGCAGCGATTCGAGACCATCCTGCGTGTCGCGCAGGCCATCGTGG
AGCGTCAGAAGAACTTTTTTGCGCATGGTGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATAGCTGATACGCTGGGC
CTACACGAGTCGACTGTCTCCCGTGTGACGACAGGCAAGTACATGCTGACCCCGTTCGGCACTCTTGAATTTAAGTACTT
CTTCGGATCGCACGTGTCGACGGATACCGGGGGCGCTGCCTCTTCCACGGCAATCCGCGCCCTCATCAAGCAACTGATAG
GAGCCGAAGACCAGAAATCTCCTCTTTCGGACAGCCGAATAGCCGAGCTGCTGGCGGAACAAGGCTTCGTGGTCGCGCGC
CGCACCGTTGCGAAGTATCGCGAAGCCCTCAAGATCCCCGCGGTGAATCTGCGCAAGTCTCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(137-328)

Sigma-54, DNA binding domain (Sigma54_DBD)

(344-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

68.182

100

0.689