Detailed information NTG0728092

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: N0D28_RS11870
• Genome accession: NZ_CP104213
• Coordinates: 2303367..2304596 (+)
• Length: 409 a.a.
• NCBI ID: WP_260559726.1
• Uniprot ID: -
• Organism: Deinococcus rubellus strain Ant6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2298367..2309596

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N0D28_RS11845 (N0D28_11845)	-	2299033..2300022 (+)	990	WP_260559721.1	polyprenyl synthetase family protein	-
N0D28_RS11850 (N0D28_11850)	-	2300119..2300628 (-)	510	WP_260559722.1	superoxide dismutase	-
N0D28_RS11860 (N0D28_11860)	scpB	2302112..2302648 (-)	537	WP_260559724.1	SMC-Scp complex subunit ScpB	-
N0D28_RS11865 (N0D28_11865)	-	2302645..2303283 (-)	639	WP_260559725.1	L-threonylcarbamoyladenylate synthase	-
N0D28_RS11870 (N0D28_11870)	pilC	2303367..2304596 (+)	1230	WP_260559726.1	type II secretion system F family protein	Machinery gene
N0D28_RS11875 (N0D28_11875)	-	2304757..2305923 (+)	1167	WP_260559727.1	M20 family metallopeptidase	-
N0D28_RS11880 (N0D28_11880)	-	2306007..2306306 (+)	300	WP_260559728.1	hypothetical protein	-
N0D28_RS11885 (N0D28_11885)	-	2306390..2307448 (+)	1059	WP_260559729.1	3-deoxy-7-phosphoheptulonate synthase	-
N0D28_RS11890 (N0D28_11890)	-	2307538..2308692 (+)	1155	WP_376777624.1	PQQ-dependent sugar dehydrogenase	-

Sequence

Protein

• Length: 409 a.a.
• Molecular weight: 44611.64 Da
• Isoelectric Point: 9.9060

>NTDB_id=728092 N0D28_RS11870 WP_260559726.1 2303367..2304596(+) (pilC) [Deinococcus rubellus strain Ant6]
MPVFEYRVRDRSGKVLKSQTEADSIAQVRDSLRAKGLMIVDIKAPRKGMQTDLSDLKIPFLSDRPPGLKPVAIFSKQLAT
LINAGVPLVQALTIMQRQIEHTGLQNVVRKVRNDVEAGTPMSEAIAKFPKVFNRLYVNLVRAGETSGTLDSVLERISDFQ
EKDLALRGKIKSAMTYPVIVLVFALLITYFLLTTIVPQFGGILTQLGGDLPPLTRGLMAASDFLKTKTIVIVLIVAVIVV
AYRQYYKTNKGRRVIDDFKLKTPVFGTLMKRTAIASFARTFGLLISSGVNIIESLEITKGTANNAIVEDTIENAKNVVMV
GEQMSGSLAASPVFPPMVVSMIAIGEETGALDTMLGKVADFYDREVEEAVEGLTAAIEPVMIVFLGTIVGLIVAGMFLPM
FSIINQLSK

Nucleotide

• Length: 1230 bp

>NTDB_id=728092 N0D28_RS11870 WP_260559726.1 2303367..2304596(+) (pilC) [Deinococcus rubellus strain Ant6]
ATGCCGGTCTTTGAATACCGCGTGCGTGATCGCAGCGGCAAGGTGCTCAAATCCCAAACCGAAGCCGACTCGATTGCCCA
GGTGCGCGACTCGCTGCGCGCCAAGGGCCTGATGATCGTCGATATCAAGGCCCCCAGAAAGGGCATGCAGACCGATCTCA
GCGATCTCAAGATTCCCTTCCTGAGTGACCGCCCACCTGGCCTCAAGCCGGTGGCCATCTTCTCCAAGCAGCTCGCCACC
CTGATCAACGCCGGGGTGCCGCTGGTGCAGGCCCTGACCATCATGCAGCGCCAGATCGAGCACACGGGGCTGCAAAATGT
GGTCCGAAAGGTCCGCAACGATGTGGAAGCCGGAACGCCGATGTCCGAGGCGATCGCCAAATTTCCCAAGGTCTTTAACC
GTCTCTATGTCAACCTGGTGCGCGCGGGTGAAACCAGCGGCACCCTCGACAGCGTGCTGGAGCGCATCAGCGACTTTCAG
GAAAAGGATTTGGCCCTGCGCGGCAAGATCAAGAGTGCCATGACCTACCCGGTGATCGTGCTGGTCTTTGCCCTGCTGAT
CACCTACTTCCTGCTCACCACCATCGTGCCCCAGTTCGGCGGCATTCTGACCCAGCTCGGCGGCGACCTGCCACCGCTCA
CCCGTGGGCTGATGGCCGCTTCCGACTTTCTCAAAACGAAAACCATCGTGATTGTTCTGATCGTGGCCGTGATCGTCGTC
GCCTACCGGCAGTACTACAAGACCAACAAAGGCCGGCGCGTCATCGACGACTTCAAGTTGAAGACACCTGTCTTCGGCAC
CCTCATGAAGAGGACGGCCATCGCCAGCTTTGCGCGCACCTTCGGCCTGCTGATCAGCAGCGGCGTGAACATCATCGAGA
GTCTGGAAATCACCAAGGGCACGGCCAACAACGCCATCGTGGAAGACACCATCGAGAACGCCAAGAACGTGGTGATGGTC
GGCGAGCAGATGAGCGGCAGTCTGGCGGCCAGTCCGGTGTTTCCACCGATGGTGGTCAGCATGATCGCCATCGGCGAGGA
AACCGGCGCGCTCGACACCATGCTCGGCAAGGTCGCCGACTTCTACGACCGCGAAGTCGAGGAGGCCGTCGAGGGTCTGA
CCGCCGCCATCGAACCGGTTATGATCGTTTTCCTGGGCACCATCGTCGGTCTGATCGTGGCGGGTATGTTCCTGCCGATG
TTCAGCATCATCAACCAGCTCAGCAAGTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (74-197)

• Type II secretion system (T2SS), protein F (T2SSF) (277-399)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	57.702	100	0.577