Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   N0D28_RS06850 Genome accession   NZ_CP104213
Coordinates   1304139..1304756 (-) Length   205 a.a.
NCBI ID   WP_312846437.1    Uniprot ID   -
Organism   Deinococcus rubellus strain Ant6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1299139..1309756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N0D28_RS06825 (N0D28_06825) - 1300509..1301621 (+) 1113 WP_260561616.1 putative Ig domain-containing protein -
  N0D28_RS06830 (N0D28_06830) - 1301618..1302829 (+) 1212 WP_260561617.1 hypothetical protein -
  N0D28_RS06835 (N0D28_06835) - 1302826..1303383 (+) 558 WP_260561618.1 hypothetical protein -
  N0D28_RS06840 (N0D28_06840) - 1303400..1303615 (+) 216 WP_260561620.1 RNA-binding S4 domain-containing protein -
  N0D28_RS06845 (N0D28_06845) - 1303612..1304142 (+) 531 WP_260561621.1 DUF1684 domain-containing protein -
  N0D28_RS06850 (N0D28_06850) comF 1304139..1304756 (-) 618 WP_312846437.1 ComF family protein Machinery gene
  N0D28_RS06855 (N0D28_06855) - 1304786..1305328 (-) 543 WP_260561622.1 hypothetical protein -
  N0D28_RS06860 (N0D28_06860) - 1305402..1306841 (+) 1440 WP_260561623.1 PLP-dependent aminotransferase family protein -
  N0D28_RS06865 (N0D28_06865) - 1306937..1308127 (+) 1191 WP_260561624.1 BMP family protein -
  N0D28_RS06870 (N0D28_06870) - 1308250..1308558 (-) 309 WP_260561625.1 hypothetical protein -
  N0D28_RS06875 (N0D28_06875) - 1308661..1308861 (-) 201 WP_260561626.1 hypothetical protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22104.56 Da        Isoelectric Point: 11.1664

>NTDB_id=728088 N0D28_RS06850 WP_312846437.1 1304139..1304756(-) (comF) [Deinococcus rubellus strain Ant6]
MPRPCPGCGAALGRESGLCRACRAELRPRLERHSMLSNAVTPHLVILGEHRAVLRRAARELKYGGHRDLAQVLGAALARG
VPDEWHLKAVSAVPMHAGRQRQRRFNHAELLARCVASELGLPYQESLRRTRATTQQAKLSGQARLGNLIGAFSARGQGLS
LSGAGLSQPLLMVDDVMTTGATLRACRDALAEGGVTEVFYAVLTR

Nucleotide


Download         Length: 618 bp        

>NTDB_id=728088 N0D28_RS06850 WP_312846437.1 1304139..1304756(-) (comF) [Deinococcus rubellus strain Ant6]
TTGCCGCGCCCCTGTCCCGGCTGCGGAGCGGCGCTGGGCCGGGAGAGCGGGCTGTGCAGGGCTTGCCGGGCCGAGTTGCG
CCCACGCCTGGAACGCCACTCGATGCTCAGCAATGCCGTCACGCCGCATCTGGTGATTCTGGGCGAGCACAGGGCGGTCC
TGCGCCGCGCTGCCCGTGAGCTGAAATACGGCGGCCACCGCGATCTGGCGCAGGTCTTGGGAGCAGCACTGGCACGCGGC
GTGCCGGATGAATGGCATCTGAAGGCGGTGAGCGCCGTACCGATGCACGCGGGCCGTCAGCGTCAGCGCCGCTTCAACCA
CGCCGAGCTGCTGGCCCGCTGCGTCGCCAGTGAGCTGGGTTTGCCCTACCAGGAAAGCCTGCGCCGCACCCGGGCCACCA
CCCAGCAGGCCAAGCTCAGCGGCCAGGCCCGCCTTGGCAACCTGATCGGCGCATTCTCGGCGCGGGGCCAGGGCCTGAGC
TTATCGGGAGCCGGACTCTCGCAACCCCTGCTGATGGTCGATGATGTGATGACCACTGGCGCAACCCTGCGCGCCTGCCG
CGACGCGCTGGCCGAGGGCGGCGTGACCGAAGTGTTTTACGCGGTGCTGACCCGCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.049

100

0.58