Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NYZ99_RS18400 Genome accession   NZ_CP104205
Coordinates   3408254..3409615 (+) Length   453 a.a.
NCBI ID   WP_260572611.1    Uniprot ID   -
Organism   Maribacter litopenaei strain HL-LV01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3403254..3414615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYZ99_RS18370 (NYZ99_18370) - 3403608..3404417 (-) 810 WP_260572606.1 glycogen/starch synthase -
  NYZ99_RS18375 (NYZ99_18375) panC 3404521..3405366 (+) 846 WP_260572607.1 pantoate--beta-alanine ligase -
  NYZ99_RS18380 (NYZ99_18380) panD 3405380..3405730 (+) 351 WP_260572608.1 aspartate 1-decarboxylase -
  NYZ99_RS18385 (NYZ99_18385) - 3405827..3406792 (+) 966 WP_260572609.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  NYZ99_RS22395 - 3406819..3407307 (+) 489 WP_338039124.1 alpha/beta hydrolase -
  NYZ99_RS22400 - 3407271..3407960 (+) 690 WP_338039125.1 hypothetical protein -
  NYZ99_RS18395 (NYZ99_18395) - 3408027..3408197 (+) 171 WP_260572610.1 hypothetical protein -
  NYZ99_RS18400 (NYZ99_18400) radA 3408254..3409615 (+) 1362 WP_260572611.1 DNA repair protein RadA Machinery gene
  NYZ99_RS18405 (NYZ99_18405) - 3409787..3410827 (-) 1041 WP_260572612.1 aldo/keto reductase -
  NYZ99_RS18410 (NYZ99_18410) - 3410905..3411669 (-) 765 WP_260572613.1 exodeoxyribonuclease III -
  NYZ99_RS18415 (NYZ99_18415) - 3411800..3412138 (+) 339 WP_260572614.1 hypothetical protein -
  NYZ99_RS18420 (NYZ99_18420) - 3412351..3413199 (+) 849 WP_260572615.1 TonB-dependent receptor plug domain-containing protein -
  NYZ99_RS18425 (NYZ99_18425) - 3413153..3414430 (+) 1278 WP_260572616.1 TonB-dependent receptor -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49634.27 Da        Isoelectric Point: 7.5691

>NTDB_id=728033 NYZ99_RS18400 WP_260572611.1 3408254..3409615(+) (radA) [Maribacter litopenaei strain HL-LV01]
MAKTKTAFFCQNCGTQYAKWVGQCTACKEWNTVVEEVVQKEEKTNWKPTNSATKRVSKPLLVHEISVEKELRLNTFDQEY
NRVLGGGLVPGALVLLGGEPGVGKSTLLLQIALKLPYKTLYVSGEESRKQIKMRADRILPNSETCYILTETKTQNIFKQI
EATEPDIVVIDSIQTLHSDYIESAAGSISQIRECTAELIKFAKETNTPVILIGHITKDGSIAGPKILEHMVDTVLQFEGD
RNYVYRILRSLKNRFGSTAELGIYEMQGSGLREVNNPSEVLVSKNDEGLSGTAIASTVEGMRPLLIEIQALVSTAVYGTP
QRSTTGYNAKRLNMLLAVLEKRAGFKLGAKDVFLNITGGISVDDPAIDLAVIAAILSSNEDIPIEKGICFAAEVGLAGEI
RPVQRVEQRILEAEKLGYTTIVVSKNNKIGLKNTKIKVQLAAKIEDVVSSLFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=728033 NYZ99_RS18400 WP_260572611.1 3408254..3409615(+) (radA) [Maribacter litopenaei strain HL-LV01]
ATGGCCAAAACTAAAACCGCATTTTTTTGTCAGAATTGCGGCACGCAATATGCCAAATGGGTGGGACAATGTACCGCTTG
CAAGGAATGGAACACGGTAGTTGAAGAAGTGGTTCAAAAGGAGGAAAAAACCAACTGGAAACCTACCAATTCTGCTACCA
AACGAGTTTCCAAACCTTTGTTGGTACATGAAATTAGTGTAGAAAAGGAACTGCGCCTTAATACGTTCGACCAAGAGTAC
AATAGAGTCCTGGGAGGTGGTCTAGTCCCCGGAGCTTTGGTACTTTTGGGAGGAGAACCGGGCGTTGGAAAAAGTACCTT
ATTGTTACAGATTGCCCTAAAATTACCGTACAAGACCTTGTATGTTTCGGGTGAGGAAAGCCGGAAGCAGATTAAGATGC
GGGCGGACCGCATCCTTCCCAATAGCGAAACCTGTTATATCCTGACGGAAACCAAGACCCAAAATATCTTTAAGCAAATA
GAGGCTACCGAGCCTGATATCGTGGTTATCGATTCCATTCAAACCTTACATTCGGATTATATTGAGTCAGCCGCAGGGAG
TATTTCGCAGATTAGGGAATGCACCGCGGAGCTTATCAAATTTGCCAAAGAAACCAATACACCGGTTATTTTGATTGGCC
ATATTACCAAGGATGGTTCCATTGCGGGACCCAAAATTTTGGAACATATGGTGGATACGGTCTTGCAATTTGAAGGAGAT
CGCAATTATGTATACCGAATTCTCCGTTCCCTTAAAAACCGATTTGGCTCTACGGCAGAATTGGGCATTTATGAAATGCA
GGGCAGCGGACTTAGAGAAGTAAACAATCCCTCCGAAGTCCTGGTGTCCAAGAACGATGAAGGCCTTAGCGGTACTGCCA
TCGCCTCGACGGTGGAGGGTATGCGACCTTTGTTAATTGAAATACAGGCGCTCGTAAGCACGGCAGTTTATGGCACCCCG
CAGCGTTCTACAACTGGTTATAATGCCAAACGTTTGAACATGCTTTTGGCCGTGTTGGAAAAAAGGGCGGGATTTAAACT
GGGAGCCAAAGACGTATTTCTGAATATCACAGGGGGAATCTCTGTAGACGACCCCGCTATTGACTTGGCCGTTATTGCAG
CCATACTATCAAGTAATGAGGACATACCTATTGAAAAAGGCATCTGTTTTGCCGCCGAAGTAGGACTCGCTGGTGAAATA
CGGCCTGTTCAACGGGTAGAGCAGCGCATCTTGGAAGCTGAAAAATTAGGCTATACGACCATTGTTGTCTCCAAAAACAA
TAAAATCGGTTTAAAGAATACCAAAATCAAGGTTCAGCTCGCGGCCAAGATAGAGGATGTGGTGAGCAGTTTGTTTGGAT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(338-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(78-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

48.791

100

0.49
  radA Streptococcus mitis NCTC 12261

48.791

100

0.49
  radA Streptococcus pneumoniae Rx1

48.791

100

0.49
  radA Streptococcus pneumoniae R6

48.791

100

0.49
  radA Streptococcus pneumoniae TIGR4

48.791

100

0.49
  radA Streptococcus mitis SK321

48.571

100

0.488
  radA Bacillus subtilis subsp. subtilis str. 168

47.921

100

0.483