Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   N0B40_RS19125 Genome accession   NZ_CP104203
Coordinates   4161004..4162353 (-) Length   449 a.a.
NCBI ID   WP_260542450.1    Uniprot ID   -
Organism   Chryseobacterium oranimense strain 33-M-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4156004..4167353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N0B40_RS19105 (N0B40_19105) - 4156227..4158614 (-) 2388 WP_260542444.1 M1 family metallopeptidase -
  N0B40_RS19110 (N0B40_19110) - 4158682..4159260 (-) 579 WP_260545908.1 HupE/UreJ family protein -
  N0B40_RS19115 (N0B40_19115) - 4159330..4159830 (+) 501 WP_260542446.1 DUF6702 family protein -
  N0B40_RS19120 (N0B40_19120) - 4160354..4160950 (-) 597 WP_260542448.1 ACP phosphodiesterase -
  N0B40_RS19125 (N0B40_19125) radA 4161004..4162353 (-) 1350 WP_260542450.1 DNA repair protein RadA Machinery gene
  N0B40_RS19130 (N0B40_19130) - 4162409..4162819 (+) 411 WP_260542452.1 hypothetical protein -
  N0B40_RS19135 (N0B40_19135) - 4162885..4163454 (+) 570 WP_260542453.1 YceI family protein -
  N0B40_RS19140 (N0B40_19140) - 4163694..4165301 (+) 1608 WP_260542455.1 CTP synthase -
  N0B40_RS19145 (N0B40_19145) yidC 4165481..4167277 (+) 1797 WP_260542457.1 membrane protein insertase YidC -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49872.44 Da        Isoelectric Point: 6.4067

>NTDB_id=728027 N0B40_RS19125 WP_260542450.1 4161004..4162353(-) (radA) [Chryseobacterium oranimense strain 33-M-3]
MAKLKTAYFCQNCGTQYSQWMGQCKNCGEWNTLVEEVVEKTSSKTPPFSKSKQHVINIIEVETSEEPRIKTPSEELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKIFYVSGEESASQIKMRADRLTDVQNPNCFLFTETSLEKILHEAKKL
EPDFMIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKFAKETNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTSEIGIYEMVSQGLKEIRNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDAKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEHFCFAGEIGLSGEIRPI
AQVEQRITEAEKLGYEKIFVSNLNKIPKRKFGIKIEEVSKIEDFHERIF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=728027 N0B40_RS19125 WP_260542450.1 4161004..4162353(-) (radA) [Chryseobacterium oranimense strain 33-M-3]
ATGGCAAAACTGAAAACAGCATATTTCTGTCAAAACTGCGGAACCCAATACTCCCAATGGATGGGACAGTGCAAAAACTG
TGGGGAATGGAATACCCTTGTGGAAGAAGTAGTTGAGAAAACCTCATCTAAAACTCCTCCATTTTCAAAATCAAAACAGC
ATGTCATCAACATTATTGAGGTTGAAACCAGTGAAGAACCCAGAATAAAAACACCTTCCGAAGAGCTGAACCGTGTTCTG
GGCGGCGGCATTGTGCTGGGCTCCGTAACCCTGATCGGAGGGGAACCCGGCATCGGAAAATCTACCCTCCTGCTTCAGCT
GGCCTTAAAGATGAAGAAAAAAATCTTCTACGTTTCCGGGGAAGAAAGTGCCTCGCAGATCAAGATGAGGGCAGACAGGC
TTACTGATGTTCAGAACCCCAACTGTTTTCTTTTTACCGAAACTTCATTGGAAAAAATTCTCCATGAAGCTAAAAAGCTG
GAACCGGATTTCATGATCATCGACTCTATCCAGACGCTTCAGTCCCAGCTGATTGAAAGTTCACCGGGAACCGTTTCCCA
AATCAGGGAATGTTCCAATGAAATTATAAAATTTGCCAAGGAGACTAACACACCCGTTTTCCTGGTAGGCCACATCACGA
AAGACGGCCAGATTGCCGGTCCAAAAGTGCTGGAACATATGGTAGATGTGGTTTTAAATTTCGATGGGGACAGAAATCAT
CTTTTCAGACTGTTAAGAGCCAATAAAAACCGTTTCGGGTCTACTTCCGAGATTGGAATTTATGAAATGGTTTCCCAGGG
ATTAAAGGAGATTAGAAATCCTTCGGAGATTCTTATCACTAAAAAATTTGAAGAGCTTTCCGGAAACTCGGTAGCCGTAA
CACTGGAAGGAAACCGCCCGATGCTGCTGGAAATCCAGGCCTTGGTAAGCACCGCTGTTTATGGTACACCGCAGAGAAGC
TCAACCGGATTTGATGCTAAAAGACTGAATATGTTGCTGGCTGTCCTTGAAAAGCGTGCCGGATTCCAGCTTGGAGCTAA
AGATGTCTTTTTAAATATTACGGGAGGCATAAAAACGGATGACCCGGCCTTAGATCTGGCTGTTGTGGCTTCTATTCTGT
CTTCCAATGAAGACATTGCCATTTCCGAACATTTCTGTTTTGCAGGAGAGATTGGGTTAAGCGGCGAAATCCGCCCTATT
GCCCAGGTTGAACAGAGAATTACAGAAGCTGAAAAATTAGGCTACGAAAAAATATTTGTTTCAAATCTCAATAAAATCCC
AAAAAGAAAATTTGGAATTAAGATCGAGGAGGTAAGTAAAATTGAGGATTTCCACGAAAGAATCTTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(338-423)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(65-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.894

100

0.492
  radA Streptococcus pneumoniae Rx1

47.414

100

0.49
  radA Streptococcus pneumoniae D39

47.414

100

0.49
  radA Streptococcus pneumoniae R6

47.414

100

0.49
  radA Streptococcus pneumoniae TIGR4

47.414

100

0.49
  radA Streptococcus mitis NCTC 12261

47.414

100

0.49
  radA Streptococcus mitis SK321

47.186

100

0.486