Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   NDR95_RS22200 Genome accession   NZ_CP104170
Coordinates   4728305..4728862 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain HW001G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4723305..4733862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDR95_RS22180 (NDR95_22180) pilR 4724569..4725906 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  NDR95_RS22185 (NDR95_22185) thiO 4725952..4727058 (-) 1107 WP_119565529.1 glycine oxidase ThiO -
  NDR95_RS22190 (NDR95_22190) - 4727193..4727702 (+) 510 WP_003161431.1 Tfp pilus assembly protein FimT/FimU -
  NDR95_RS22195 (NDR95_22195) - 4727808..4728314 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  NDR95_RS22200 (NDR95_22200) pilV 4728305..4728862 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  NDR95_RS22205 (NDR95_22205) pilW 4728859..4729683 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  NDR95_RS22210 (NDR95_22210) pilX 4729680..4730267 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  NDR95_RS22215 (NDR95_22215) pilY1 4730279..4733770 (+) 3492 WP_034045670.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=727859 NDR95_RS22200 WP_003119423.1 4728305..4728862(+) (pilV) [Pseudomonas aeruginosa strain HW001G]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=727859 NDR95_RS22200 WP_003119423.1 4728305..4728862(+) (pilV) [Pseudomonas aeruginosa strain HW001G]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTTAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995