Detailed information NTG0727762

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: P1J20_RS05420
• Genome accession: NZ_CP119726
• Coordinates: 1115982..1116974 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain E16
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1110982..1121974

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P1J20_RS05390 (P1J20_05390)	ispD	1111043..1111753 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
P1J20_RS05395 (P1J20_05395)	ispF	1111753..1112232 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
P1J20_RS05400 (P1J20_05400)	truD	1112229..1113278 (+)	1050	WP_000568921.1	tRNA pseudouridine(13) synthase TruD	-
P1J20_RS05405 (P1J20_05405)	surE	1113259..1114020 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
P1J20_RS05410 (P1J20_05410)	pcm	1114014..1114640 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
P1J20_RS05415 (P1J20_05415)	nlpD	1114825..1115919 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
P1J20_RS05420 (P1J20_05420)	rpoS	1115982..1116974 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
P1J20_RS05425 (P1J20_05425)	-	1117095..1117502 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
P1J20_RS05430 (P1J20_05430)	-	1117649..1118242 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
P1J20_RS05435 (P1J20_05435)	-	1118242..1119669 (+)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
P1J20_RS05440 (P1J20_05440)	-	1119680..1119916 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
P1J20_RS05445 (P1J20_05445)	ygbN	1119955..1121319 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=727762 P1J20_RS05420 WP_000081550.1 1115982..1116974(+) (rpoS) [Escherichia coli strain E16]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=727762 P1J20_RS05420 WP_000081550.1 1115982..1116974(+) (rpoS) [Escherichia coli strain E16]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715