Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   P3M65_RS21820 Genome accession   NZ_CP119719
Coordinates   4456349..4456954 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain IZSBS22     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4451349..4461954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3M65_RS21790 rsmS 4452054..4452215 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  P3M65_RS21795 priC 4452229..4452756 (-) 528 WP_001402074.1 primosomal replication protein N'' -
  P3M65_RS21800 ybaN 4452826..4453203 (+) 378 WP_001188905.1 DUF454 family protein -
  P3M65_RS21805 apt 4453356..4453907 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  P3M65_RS21810 dnaX 4454036..4455967 (+) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  P3M65_RS21815 ybaB 4456020..4456349 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  P3M65_RS21820 recR 4456349..4456954 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  P3M65_RS21825 htpG 4457064..4458938 (+) 1875 WP_000678208.1 molecular chaperone HtpG -
  P3M65_RS21830 adk 4459119..4459763 (+) 645 WP_001220233.1 adenylate kinase -
  P3M65_RS21835 hemH 4459999..4460961 (+) 963 WP_001250088.1 ferrochelatase -
  P3M65_RS21840 aes 4460958..4461917 (-) 960 WP_000801832.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=727737 P3M65_RS21820 WP_001195025.1 4456349..4456954(+) (recR) [Escherichia coli strain IZSBS22]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=727737 P3M65_RS21820 WP_001195025.1 4456349..4456954(+) (recR) [Escherichia coli strain IZSBS22]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443