Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N1709_RS15310 Genome accession   NZ_CP104117
Coordinates   3087771..3088400 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain USDA-ARS-USMARC-50748     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3082771..3093400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N1709_RS15295 (N1709_15295) helD 3083013..3085067 (-) 2055 WP_001315388.1 DNA helicase IV -
  N1709_RS15300 (N1709_15300) yccF 3085190..3085636 (+) 447 WP_001261235.1 YccF domain-containing protein -
  N1709_RS15305 (N1709_15305) yccS 3085646..3087808 (+) 2163 WP_000875044.1 YccS family putative transporter -
  N1709_RS15310 (N1709_15310) sxy/tfoX 3087771..3088400 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  N1709_RS15315 (N1709_15315) sulA 3088619..3089128 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  N1709_RS15320 (N1709_15320) ompA 3089485..3090537 (+) 1053 WP_000750419.1 porin OmpA -
  N1709_RS15325 (N1709_15325) matP 3090612..3091064 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  N1709_RS15330 (N1709_15330) ycbZ 3091250..3093010 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=727737 N1709_RS15310 WP_000839153.1 3087771..3088400(-) (sxy/tfoX) [Escherichia coli strain USDA-ARS-USMARC-50748]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=727737 N1709_RS15310 WP_000839153.1 3087771..3088400(-) (sxy/tfoX) [Escherichia coli strain USDA-ARS-USMARC-50748]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1