Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N1706_RS08470 Genome accession   NZ_CP104114
Coordinates   1782709..1783338 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain USDA-ARS-USMARC-51408     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1777709..1788338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N1706_RS08450 (N1706_08450) ycbZ 1778099..1779859 (-) 1761 WP_000156526.1 Lon protease family protein -
  N1706_RS08455 (N1706_08455) matP 1780045..1780497 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  N1706_RS08460 (N1706_08460) ompA 1780572..1781624 (-) 1053 WP_001361736.1 porin OmpA -
  N1706_RS08465 (N1706_08465) sulA 1781981..1782490 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  N1706_RS08470 (N1706_08470) sxy/tfoX 1782709..1783338 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  N1706_RS08475 (N1706_08475) yccS 1783301..1785463 (-) 2163 WP_000875046.1 YccS family putative transporter -
  N1706_RS08480 (N1706_08480) yccF 1785473..1785919 (-) 447 WP_001261235.1 YccF domain-containing protein -
  N1706_RS08485 (N1706_08485) helD 1786042..1788096 (+) 2055 WP_001315388.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=727706 N1706_RS08470 WP_000839153.1 1782709..1783338(+) (sxy/tfoX) [Escherichia coli strain USDA-ARS-USMARC-51408]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=727706 N1706_RS08470 WP_000839153.1 1782709..1783338(+) (sxy/tfoX) [Escherichia coli strain USDA-ARS-USMARC-51408]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1