Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   N1207_RS19365 Genome accession   NZ_CP104097
Coordinates   3689161..3689850 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain GL-4     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3684161..3694850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N1207_RS19330 (N1207_19330) flgN 3684341..3684823 (-) 483 WP_014481048.1 flagellar protein FlgN -
  N1207_RS19335 (N1207_19335) flgM 3684839..3685105 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  N1207_RS19340 (N1207_19340) yvyF 3685186..3685605 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  N1207_RS19345 (N1207_19345) comFC 3685679..3686401 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  N1207_RS19350 (N1207_19350) comFB 3686365..3686661 (-) 297 WP_003227989.1 late competence protein ComFB -
  N1207_RS19355 (N1207_19355) comFA 3686721..3688112 (-) 1392 WP_041850475.1 ATP-dependent helicase ComFA Machinery gene
  N1207_RS19360 (N1207_19360) fakBA 3688218..3689063 (-) 846 WP_003227986.1 DegV family protein -
  N1207_RS19365 (N1207_19365) degU 3689161..3689850 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  N1207_RS19370 (N1207_19370) degS 3689933..3691090 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  N1207_RS19375 (N1207_19375) yvyE 3691307..3691960 (+) 654 WP_003227979.1 YigZ family protein -
  N1207_RS19380 (N1207_19380) tagV 3691960..3693144 (+) 1185 WP_041850474.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  N1207_RS19385 (N1207_19385) tagO 3693217..3694293 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=727592 N1207_RS19365 WP_003219701.1 3689161..3689850(-) (degU) [Bacillus subtilis strain GL-4]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=727592 N1207_RS19365 WP_003219701.1 3689161..3689850(-) (degU) [Bacillus subtilis strain GL-4]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTTCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1