Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   N1207_RS05655 Genome accession   NZ_CP104097
Coordinates   1094438..1095016 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain GL-4     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1089438..1100016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N1207_RS22395 - 1089949..1090464 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  N1207_RS22400 - 1090705..1091331 (-) 627 Protein_1049 protoglobin domain-containing protein -
  N1207_RS05640 (N1207_05640) comW 1091386..1092915 (-) 1530 WP_041851020.1 FAD-dependent oxidoreductase -
  N1207_RS05645 (N1207_05645) yhxC 1093027..1093884 (+) 858 WP_021479616.1 SDR family oxidoreductase -
  N1207_RS05650 (N1207_05650) yhzC 1093912..1094145 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  N1207_RS05655 (N1207_05655) comK 1094438..1095016 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  N1207_RS05660 (N1207_05660) yhxD 1095063..1095962 (-) 900 WP_041851019.1 SDR family oxidoreductase -
  N1207_RS05665 (N1207_05665) yhjA 1096179..1096448 (+) 270 WP_038829151.1 excalibur calcium-binding domain-containing protein -
  N1207_RS05670 (N1207_05670) yhjB 1096492..1097961 (-) 1470 WP_029317574.1 sodium:solute symporter -
  N1207_RS05675 (N1207_05675) yhjC 1097958..1098158 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  N1207_RS05680 (N1207_05680) - 1098357..1098728 (-) 372 WP_014476361.1 hypothetical protein -
  N1207_RS05685 (N1207_05685) yhjE 1098880..1099503 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  N1207_RS05690 (N1207_05690) lepB 1099505..1100011 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=727540 N1207_RS05655 WP_029317573.1 1094438..1095016(+) (comK) [Bacillus subtilis strain GL-4]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=727540 N1207_RS05655 WP_029317573.1 1094438..1095016(+) (comK) [Bacillus subtilis strain GL-4]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGAGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995