Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   N1207_RS01935 Genome accession   NZ_CP104097
Coordinates   363291..363689 (-) Length   132 a.a.
NCBI ID   WP_021481824.1    Uniprot ID   -
Organism   Bacillus subtilis strain GL-4     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 358291..368689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N1207_RS01905 (N1207_01905) yckA 358867..359547 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  N1207_RS01910 (N1207_01910) yckB 359557..360420 (-) 864 WP_080121173.1 transporter substrate-binding domain-containing protein -
  N1207_RS01915 (N1207_01915) - 360581..360778 (+) 198 WP_120363256.1 hypothetical protein -
  N1207_RS01920 (N1207_01920) yckC 360798..361253 (+) 456 WP_024572178.1 RDD family protein -
  N1207_RS01925 (N1207_01925) yckD 361335..361667 (+) 333 WP_003246247.1 YckD family protein -
  N1207_RS01930 (N1207_01930) bglC 361821..363254 (+) 1434 WP_038828490.1 6-phospho-beta-glucosidase -
  N1207_RS01935 (N1207_01935) nin/comJ 363291..363689 (-) 399 WP_021481824.1 DNA-entry nuclease inhibitor Regulator
  N1207_RS01940 (N1207_01940) nucA/comI 363716..364165 (-) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  N1207_RS01945 (N1207_01945) tlpC 364333..366054 (-) 1722 WP_021481821.1 methyl-accepting chemotaxis protein TlpC -
  N1207_RS01950 (N1207_01950) hxlB 366164..366721 (-) 558 WP_041850679.1 6-phospho-3-hexuloisomerase -
  N1207_RS01955 (N1207_01955) hxlA 366727..367359 (-) 633 WP_041850680.1 3-hexulose-6-phosphate synthase -
  N1207_RS01960 (N1207_01960) hxlR 367592..367954 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14962.93 Da        Isoelectric Point: 4.8991

>NTDB_id=727528 N1207_RS01935 WP_021481824.1 363291..363689(-) (nin/comJ) [Bacillus subtilis strain GL-4]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILLRLNSSETVNSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=727528 N1207_RS01935 WP_021481824.1 363291..363689(-) (nin/comJ) [Bacillus subtilis strain GL-4]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAACTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATTATGTCTAAAAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGTTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

99.242

100

0.992