Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   N1207_RS00245 Genome accession   NZ_CP104097
Coordinates   44376..44666 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain GL-4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39376..49666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N1207_RS00205 (N1207_00205) darA 39399..39728 (+) 330 WP_003242755.1 cyclic di-AMP receptor DarA -
  N1207_RS00210 (N1207_00210) yaaR 39741..40181 (+) 441 WP_009966249.1 YaaR family protein -
  N1207_RS00215 (N1207_00215) holB 40193..41182 (+) 990 WP_003226770.1 DNA polymerase III subunit delta' -
  N1207_RS00220 (N1207_00220) ricT 41185..42012 (+) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  N1207_RS00225 (N1207_00225) yabA 42027..42386 (+) 360 WP_003218308.1 replication initiation-control protein YabA -
  N1207_RS00230 (N1207_00230) trmNF 42445..43188 (+) 744 WP_003226765.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  N1207_RS00235 (N1207_00235) yazA 43175..43474 (+) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  N1207_RS00240 (N1207_00240) rsmI 43449..44327 (+) 879 WP_003243457.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  N1207_RS00245 (N1207_00245) abrB 44376..44666 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  N1207_RS00250 (N1207_00250) metG 45161..47155 (+) 1995 WP_003226758.1 methionine--tRNA ligase -
  N1207_RS00255 (N1207_00255) dayD 47235..48002 (+) 768 WP_014475570.1 TatD family hydrolase -
  N1207_RS00260 (N1207_00260) yabE 48158..49471 (+) 1314 WP_015715099.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=727524 N1207_RS00245 WP_003226760.1 44376..44666(-) (abrB) [Bacillus subtilis strain GL-4]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=727524 N1207_RS00245 WP_003226760.1 44376..44666(-) (abrB) [Bacillus subtilis strain GL-4]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1