Detailed information NTG0727360

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: N2A94_RS08095
• Genome accession: NZ_CP104048
• Coordinates: 1574941..1575876 (-)
• Length: 311 a.a.
• NCBI ID: WP_013794449.1
• Uniprot ID: -
• Organism: Streptococcus parauberis strain KSP20
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1569941..1580876

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N2A94_RS08070 (N2A94_08070)	tsaD	1570572..1571585 (-)	1014	WP_003105067.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
N2A94_RS08075 (N2A94_08075)	rimI	1571575..1571991 (-)	417	WP_003105855.1	ribosomal protein S18-alanine N-acetyltransferase	-
N2A94_RS08080 (N2A94_08080)	tsaB	1571996..1572688 (-)	693	WP_304951726.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
N2A94_RS08085 (N2A94_08085)	-	1572961..1573191 (+)	231	WP_003102975.1	DNA-dependent RNA polymerase subunit epsilon	-
N2A94_RS08090 (N2A94_08090)	rnjA	1573193..1574875 (+)	1683	WP_003107714.1	ribonuclease J1	-
N2A94_RS08095 (N2A94_08095)	amiF	1574941..1575876 (-)	936	WP_013794449.1	ABC transporter ATP-binding protein	Regulator
N2A94_RS08100 (N2A94_08100)	oppD	1575876..1576919 (-)	1044	WP_003103717.1	ABC transporter ATP-binding protein	Regulator
N2A94_RS08105 (N2A94_08105)	-	1576934..1577965 (-)	1032	WP_003107717.1	ABC transporter permease	-
N2A94_RS08110 (N2A94_08110)	-	1577975..1578889 (-)	915	WP_004347295.1	ABC transporter permease	-
N2A94_RS08115 (N2A94_08115)	-	1578965..1580623 (-)	1659	WP_013794450.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35219.18 Da
• Isoelectric Point: 6.5131

>NTDB_id=727360 N2A94_RS08095 WP_013794449.1 1574941..1575876(-) (amiF) [Streptococcus parauberis strain KSP20]
MTEERKKLVELKNVSLTFNKGKSNEVKAINNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYEITDGEIIFNGVNITKL
KGKELHNFRKDAQMIFQDPQASLNGRMKIRDIIAEGLDIHGLTKTKEEREARVQELLDRVGLNKDHVTRYPHEFSGGQRQ
RIGIARALAVKPKFIIADEPISALDVSIQAQVVNLMQKLQTERGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSED
VYNNPIHPYTRSLLSAIPEPDPDYERQRVAEIYDPSIELDGKEREMREITPGHFVFSTEEEAVAYKANSNK

Nucleotide

• Length: 936 bp

>NTDB_id=727360 N2A94_RS08095 WP_013794449.1 1574941..1575876(-) (amiF) [Streptococcus parauberis strain KSP20]
ATGACTGAAGAACGTAAAAAATTAGTTGAACTAAAAAACGTTTCTTTAACCTTTAATAAAGGGAAAAGCAACGAAGTCAA
GGCCATTAATAATGTCAGTTTTGATATCTATGAAGGTGAAGTCTTTGGATTAGTTGGGGAATCAGGTTCTGGTAAAACAA
CAGTTGGCCGTGCTATCTTAAAACTTTATGAAATTACCGATGGCGAAATTATTTTCAATGGTGTAAATATCACTAAACTA
AAAGGAAAAGAACTTCATAATTTCCGTAAAGATGCACAAATGATTTTCCAAGATCCACAAGCAAGTCTTAATGGACGGAT
GAAAATTAGAGACATCATTGCTGAAGGACTAGATATTCATGGTTTAACTAAAACAAAGGAAGAACGTGAAGCTCGTGTTC
AAGAACTACTTGACCGTGTTGGTTTGAATAAAGACCATGTGACTCGTTATCCACATGAATTTTCAGGAGGACAACGTCAA
CGTATTGGTATTGCCCGTGCCTTGGCTGTAAAACCCAAATTTATCATTGCTGATGAACCAATTTCTGCTTTGGACGTATC
TATCCAAGCACAGGTTGTTAACTTGATGCAAAAATTACAAACTGAACGTGGTTTAACCTACTTGTTTATCGCCCATGATT
TATCAATGGTTAAATACATTTCAGATCGTATTGGTGTTATGCACTGGGGTAAAATGTTAGAAATTGGGACATCTGAAGAT
GTTTATAATAACCCAATTCACCCATATACAAGAAGTCTCTTATCAGCTATTCCTGAACCAGACCCAGATTATGAACGCCA
ACGTGTTGCGGAAATTTATGATCCAAGTATTGAATTGGATGGAAAAGAACGTGAAATGCGTGAAATCACACCAGGTCACT
TCGTATTTTCAACAGAAGAAGAAGCAGTAGCTTACAAAGCAAATTCAAATAAATAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-265)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.221	99.035	0.537
amiF	Streptococcus thermophilus LMG 18311	53.896	99.035	0.534
amiF	Streptococcus salivarius strain HSISS4	53.247	99.035	0.527