Detailed information NTG0727333

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: N2A94_RS00660
• Genome accession: NZ_CP104048
• Coordinates: 123319..125763 (+)
• Length: 814 a.a.
• NCBI ID: WP_013794487.1
• Uniprot ID: -
• Organism: Streptococcus parauberis strain KSP20
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 118319..130763

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N2A94_RS00635 (N2A94_00635)	-	118747..119706 (-)	960	WP_003107825.1	VOC family protein	-
N2A94_RS00640 (N2A94_00640)	-	119809..121881 (-)	2073	WP_013794489.1	sodium:proton antiporter	-
N2A94_RS00645 (N2A94_00645)	-	121883..122152 (-)	270	WP_003105467.1	hypothetical protein	-
N2A94_RS00650 (N2A94_00650)	-	122481..122681 (+)	201	WP_003104168.1	cold-shock protein	-
N2A94_RS00655 (N2A94_00655)	-	122859..123326 (+)	468	WP_003103836.1	CtsR family transcriptional regulator	-
N2A94_RS00660 (N2A94_00660)	clpC	123319..125763 (+)	2445	WP_013794487.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
N2A94_RS00665 (N2A94_00665)	groES	125958..126242 (+)	285	WP_003105909.1	co-chaperone GroES	-
N2A94_RS00670 (N2A94_00670)	groL	126280..127908 (+)	1629	WP_003107822.1	chaperonin GroEL	-
N2A94_RS00675 (N2A94_00675)	-	128058..128552 (+)	495	WP_003107821.1	YSIRK-type signal peptide-containing protein	-
N2A94_RS00680 (N2A94_00680)	-	128509..128688 (+)	180	WP_238570148.1	hypothetical protein	-
N2A94_RS00685 (N2A94_00685)	-	128609..130387 (+)	1779	WP_259966522.1	G5 domain-containing protein	-

Sequence

Protein

• Length: 814 a.a.
• Molecular weight: 90227.56 Da
• Isoelectric Point: 6.0116

>NTDB_id=727333 N2A94_RS00660 WP_013794487.1 123319..125763(+) (clpC) [Streptococcus parauberis strain KSP20]
MIDYSIKMQEIFKQAQYQAARFGSSHLETWHILLAMVKEEGSLAGLVFSEFNNKISEEEYEAAAILAVGKSPQDDIKEVH
FLGQSKTLTNILKFSEMISLVTNASEVGSEHVLFAILLNPDIMAARLLEMAGFKIKDDGQGQPKLADLRKAIEIQAAYSK
ETIKAIHELRKPKKAKGAGSFSDMMKPASTAGDLSDFTRDLTEMANQGLLEPVIGRDKEITRMIQVLSRKTKNNPVLVGD
AGVGKTALAYGLAQRIANGSIPYELQDMRVLELDMMSVVAGTRFRGDFEERMNQIIDDIETDGQIILFVDELHTIMGSGS
GIDSTLDAANILKPALSRGTLHMVGATTQEEYQKHIEKDAALSRRFAKVLIEEPNLEDAYQILLGLKGSYERFHNVSISD
QAVKTAVKVAHRYLTSKNLPDSAIDLLDEASATVQGLVKKEKASILTPIDQAILEKDFKTVSKLLKAQVNNKSAKPTLVT
EDNIMSTLSKLSGIPVEKLTQADSKKYLNLEKELHKRVIGQEDAVSAISRAIRRNQSGIRTGRRPIGSFMFLGPTGVGKT
ELAKALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLLQ
VLDDGMLTDSRGRRVDFSNTIIIMTSNLGATALRDDKTVGFGAKDISQDHQAMEKRILEELKKSYRPEFINRIDEKVVFH
SLSQEDMKEVVMIMVKPLVTNLAEKGVSLKIQPSALNYLSEEGYDVEMGARPLRRTLQTHIEDKLSELILSGDLSSGHQL
KIGMSHGKLKFDIE

Nucleotide

• Length: 2445 bp

>NTDB_id=727333 N2A94_RS00660 WP_013794487.1 123319..125763(+) (clpC) [Streptococcus parauberis strain KSP20]
ATGATTGATTACTCAATAAAGATGCAAGAGATATTTAAACAGGCCCAGTACCAAGCAGCTCGCTTTGGCAGTTCGCATTT
GGAGACCTGGCATATTCTCTTAGCAATGGTGAAAGAAGAAGGTTCCCTAGCAGGATTAGTTTTTAGTGAATTTAATAATA
AAATTTCAGAAGAAGAATATGAAGCAGCTGCAATTTTGGCCGTGGGAAAAAGTCCTCAAGATGATATTAAAGAAGTGCAT
TTCTTAGGTCAGTCCAAGACTTTAACCAATATTCTTAAGTTTTCTGAAATGATAAGTTTGGTTACAAATGCTTCTGAAGT
AGGTTCAGAGCATGTTCTTTTTGCAATTTTGTTAAATCCAGATATTATGGCTGCCCGACTCTTAGAGATGGCTGGCTTCA
AAATTAAGGATGATGGACAAGGACAACCAAAGCTTGCTGATCTCAGAAAAGCTATTGAAATACAGGCGGCATATAGTAAA
GAAACAATTAAAGCTATTCATGAGTTACGAAAACCTAAAAAAGCCAAAGGTGCTGGATCTTTTTCTGACATGATGAAGCC
GGCTAGTACAGCTGGAGACTTGTCAGATTTCACCAGAGACCTAACGGAAATGGCCAACCAAGGACTATTAGAACCAGTTA
TCGGCAGAGATAAAGAAATCACACGGATGATTCAGGTTCTCAGTCGTAAAACCAAGAACAATCCTGTACTAGTTGGAGAT
GCTGGTGTTGGTAAGACAGCCTTAGCTTATGGACTAGCTCAACGGATTGCCAATGGATCAATTCCTTATGAATTGCAAGA
TATGCGGGTCTTGGAATTAGATATGATGAGTGTTGTTGCGGGTACACGTTTCCGTGGGGACTTCGAAGAAAGAATGAATC
AAATCATCGACGATATTGAGACGGATGGTCAGATTATTCTTTTTGTTGATGAACTACATACAATCATGGGTTCTGGTAGT
GGGATTGACAGTACTTTAGATGCAGCAAATATTTTAAAACCTGCTTTATCACGTGGAACGCTCCATATGGTAGGTGCGAC
AACACAAGAAGAGTATCAAAAACATATTGAAAAAGATGCAGCTTTATCTCGTCGTTTTGCGAAAGTGCTTATCGAAGAAC
CAAATTTGGAAGATGCTTATCAAATTTTGTTAGGACTAAAAGGATCTTATGAACGTTTCCATAATGTTTCAATTTCAGAC
CAAGCTGTCAAGACGGCTGTTAAGGTAGCTCATCGCTATTTAACCAGTAAAAATCTTCCTGATTCAGCCATTGACTTATT
AGATGAAGCAAGTGCAACGGTTCAAGGGTTAGTCAAAAAAGAAAAAGCTTCCATCTTAACACCAATTGATCAAGCAATTC
TAGAGAAGGATTTCAAAACAGTTTCAAAACTATTGAAAGCTCAAGTTAATAACAAATCTGCAAAGCCTACACTAGTGACT
GAAGATAATATCATGTCTACACTAAGCAAGTTATCAGGAATTCCTGTTGAAAAACTAACCCAAGCAGATAGCAAAAAATA
TCTTAACTTGGAAAAAGAATTGCATAAGCGTGTGATTGGTCAAGAAGATGCTGTATCAGCAATATCACGGGCAATTCGTC
GCAATCAGTCAGGAATTAGAACAGGCAGACGACCTATTGGTTCATTCATGTTCTTAGGGCCAACGGGAGTTGGTAAAACA
GAATTAGCAAAAGCTTTAGCAGAAGTTCTCTTTGATGATGAGTCAGCACTAATTCGATTCGATATGTCCGAGTATATGGA
AAAATTTGCAGCTAGTCGATTAAATGGGGCACCTCCAGGCTATGTCGGCTATGAAGAAGGTGGCGAACTGACAGAAAAGG
TTAGAAATAAACCTTATTCTGTTCTACTATTTGATGAAGTTGAAAAAGCCCATCCGGATATCTTTAATGTCCTATTGCAA
GTTCTAGATGATGGGATGTTAACAGACAGTCGCGGGCGTCGCGTTGATTTCTCAAACACCATTATTATTATGACTAGTAA
CTTGGGCGCGACGGCCTTACGTGATGATAAAACAGTTGGTTTTGGTGCCAAAGATATTTCTCAAGACCACCAAGCCATGG
AAAAACGAATTTTGGAAGAATTGAAGAAATCCTACAGACCAGAATTCATTAACAGGATAGATGAGAAGGTAGTCTTCCAT
AGCCTCAGTCAAGAGGATATGAAAGAAGTAGTGATGATTATGGTTAAACCATTAGTTACTAATTTGGCGGAAAAAGGCGT
TAGTCTGAAAATTCAACCATCGGCCCTCAACTATCTCTCAGAGGAAGGCTATGATGTGGAGATGGGGGCAAGACCACTCC
GAAGAACGCTACAAACGCATATTGAAGATAAACTGTCAGAATTGATTCTTTCTGGCGACTTATCTAGTGGACACCAGTTG
AAAATAGGAATGTCCCATGGCAAATTAAAATTTGACATAGAATAA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (722-801)

• ATPase family associated with various cellular activities (AAA) (AAA) (236-368)

• AAA lid domain (AAA_lid_9) (376-453)

• AAA domain (Cdc48 subfamily) (AAA_2) (544-715)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (18-51)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (105-136)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus mutans UA159	74.293	99.877	0.742
clpC	Streptococcus thermophilus LMD-9	71.394	100	0.717
clpC	Streptococcus thermophilus LMG 18311	71.394	100	0.717
clpC	Streptococcus pneumoniae Rx1	66.871	100	0.67
clpC	Streptococcus pneumoniae D39	66.871	100	0.67
clpC	Streptococcus pneumoniae TIGR4	66.748	100	0.668
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	48.139	100	0.493
clpC	Bacillus subtilis subsp. subtilis str. 168	44.922	100	0.462