Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   N2A94_RS00545 Genome accession   NZ_CP104048
Coordinates   98219..98932 (-) Length   237 a.a.
NCBI ID   WP_037620338.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KSP20     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 93219..103932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A94_RS00510 (N2A94_00510) - 93672..93821 (+) 150 WP_003108936.1 hypothetical protein -
  N2A94_RS00515 (N2A94_00515) - 93845..94807 (+) 963 WP_013794498.1 Gfo/Idh/MocA family protein -
  N2A94_RS00520 (N2A94_00520) - 94788..95282 (+) 495 WP_003108940.1 GNAT family N-acetyltransferase -
  N2A94_RS00525 (N2A94_00525) nrdG 95297..95911 (+) 615 WP_003104313.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  N2A94_RS00530 (N2A94_00530) yaaA 96029..96760 (-) 732 WP_003108941.1 peroxide stress protein YaaA -
  N2A94_RS00535 (N2A94_00535) - 96813..97667 (-) 855 WP_003108943.1 VOC family protein -
  N2A94_RS00540 (N2A94_00540) - 97869..98195 (+) 327 WP_003107849.1 helix-turn-helix domain-containing protein -
  N2A94_RS00545 (N2A94_00545) treR 98219..98932 (-) 714 WP_037620338.1 trehalose operon repressor Regulator
  N2A94_RS00550 (N2A94_00550) treP 99154..101139 (+) 1986 WP_013794496.1 PTS system trehalose-specific EIIBC component -
  N2A94_RS00555 (N2A94_00555) treC 101207..102832 (+) 1626 WP_003105838.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27687.92 Da        Isoelectric Point: 8.0440

>NTDB_id=727332 N2A94_RS00545 WP_037620338.1 98219..98932(-) (treR) [Streptococcus parauberis strain KSP20]
MKKYERIFKDLEEKIAKEIYAIDDFLPTEIELCKEYDASRDTIRKSLNLLAKAGLVKSQQGRGTQVIKHHQILFPISELT
SYHELVSYFNMDSKTNVIAIDKLIVDKYVSKLTGFKENTIIWRITRQRVVDGVASVLDIDYLNKDIVPTISREIAEVSLY
QYLEKELHLPIDFALKEVTIDQINDRDKILLDLGSDKHVVSVKSKVYLSNNEQFQFTESRHKLEKFKFVDFARRNPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=727332 N2A94_RS00545 WP_037620338.1 98219..98932(-) (treR) [Streptococcus parauberis strain KSP20]
ATGAAAAAATATGAACGCATTTTCAAAGATTTAGAAGAAAAAATTGCCAAAGAAATTTATGCTATTGATGACTTTTTACC
AACTGAAATTGAACTCTGTAAAGAGTATGATGCAAGTAGAGATACTATTCGTAAGTCACTGAACCTTCTAGCGAAAGCTG
GACTAGTTAAAAGCCAACAAGGTCGTGGAACTCAAGTCATCAAACACCATCAAATATTATTCCCCATTTCTGAATTAACG
AGTTATCATGAGTTAGTTTCCTACTTCAATATGGATTCGAAAACAAATGTTATTGCTATTGATAAATTAATTGTAGACAA
ATATGTTTCAAAATTAACTGGCTTCAAAGAAAATACAATTATCTGGCGAATCACCCGTCAGCGTGTTGTTGATGGCGTTG
CCTCAGTTTTAGACATTGATTACTTGAATAAGGATATAGTCCCTACAATCTCAAGAGAAATTGCTGAAGTATCACTTTAT
CAATATTTGGAGAAAGAACTCCACTTACCAATTGATTTTGCCTTAAAAGAAGTTACAATTGACCAAATCAATGATCGGGA
TAAAATTTTACTAGATTTAGGATCTGACAAACATGTTGTCTCTGTGAAATCAAAAGTCTATTTGTCAAATAATGAACAAT
TCCAATTTACAGAAAGCCGGCATAAATTAGAAAAATTCAAATTTGTTGACTTTGCCAGACGAAATCCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(92-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

64.681

99.156

0.641