Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   N2A96_RS09935 Genome accession   NZ_CP104047
Coordinates   1974649..1975362 (+) Length   237 a.a.
NCBI ID   WP_037620338.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KSP10     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1969649..1980362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A96_RS09925 (N2A96_09925) treC 1970749..1972374 (-) 1626 WP_003107845.1 alpha,alpha-phosphotrehalase -
  N2A96_RS09930 (N2A96_09930) treP 1972442..1974427 (-) 1986 WP_003107846.1 PTS system trehalose-specific EIIBC component -
  N2A96_RS09935 (N2A96_09935) treR 1974649..1975362 (+) 714 WP_037620338.1 trehalose operon repressor Regulator
  N2A96_RS09940 (N2A96_09940) - 1975386..1975712 (-) 327 WP_003107849.1 helix-turn-helix domain-containing protein -
  N2A96_RS09945 (N2A96_09945) - 1975914..1976768 (+) 855 WP_003104582.1 VOC family protein -
  N2A96_RS09950 (N2A96_09950) yaaA 1976821..1977552 (+) 732 WP_003107851.1 peroxide stress protein YaaA -
  N2A96_RS09955 (N2A96_09955) nrdG 1977670..1978284 (-) 615 WP_003107852.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  N2A96_RS09960 (N2A96_09960) - 1978299..1978793 (-) 495 WP_003107853.1 GNAT family N-acetyltransferase -
  N2A96_RS09965 (N2A96_09965) - 1978774..1979736 (-) 963 WP_003107854.1 Gfo/Idh/MocA family protein -
  N2A96_RS09970 (N2A96_09970) - 1979760..1979909 (-) 150 WP_003107855.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27687.92 Da        Isoelectric Point: 8.0440

>NTDB_id=727323 N2A96_RS09935 WP_037620338.1 1974649..1975362(+) (treR) [Streptococcus parauberis strain KSP10]
MKKYERIFKDLEEKIAKEIYAIDDFLPTEIELCKEYDASRDTIRKSLNLLAKAGLVKSQQGRGTQVIKHHQILFPISELT
SYHELVSYFNMDSKTNVIAIDKLIVDKYVSKLTGFKENTIIWRITRQRVVDGVASVLDIDYLNKDIVPTISREIAEVSLY
QYLEKELHLPIDFALKEVTIDQINDRDKILLDLGSDKHVVSVKSKVYLSNNEQFQFTESRHKLEKFKFVDFARRNPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=727323 N2A96_RS09935 WP_037620338.1 1974649..1975362(+) (treR) [Streptococcus parauberis strain KSP10]
ATGAAAAAATATGAACGCATTTTCAAAGATTTAGAAGAAAAAATTGCCAAAGAAATTTATGCTATTGATGACTTTTTACC
AACTGAAATTGAACTCTGTAAAGAGTATGATGCAAGTAGAGATACTATTCGTAAGTCACTGAACCTTCTAGCGAAAGCTG
GACTAGTTAAAAGCCAACAAGGTCGTGGAACTCAAGTCATCAAACACCATCAAATATTATTCCCCATTTCTGAATTAACG
AGTTATCATGAGTTAGTTTCCTACTTCAATATGGATTCGAAAACAAATGTTATTGCTATTGATAAATTAATTGTAGACAA
ATATGTTTCAAAATTAACTGGCTTCAAAGAAAATACAATTATCTGGCGAATCACCCGTCAGCGTGTTGTTGATGGCGTTG
CCTCAGTTTTAGACATTGATTACTTGAATAAGGATATAGTCCCTACAATCTCAAGAGAAATTGCTGAAGTATCACTTTAT
CAATATTTGGAGAAAGAACTCCACTTACCAATTGATTTTGCCTTAAAAGAAGTTACAATTGACCAAATCAATGATCGGGA
TAAAATTTTACTAGATTTAGGATCTGACAAACATGTTGTCTCTGTGAAATCAAAAGTCTATTTGTCAAATAACGAACAAT
TCCAATTTACAGAAAGCCGGCATAAATTAGAAAAATTCAAATTTGTTGACTTTGCCAGACGAAATCCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(92-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

64.681

99.156

0.641