Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   N2A96_RS08290 Genome accession   NZ_CP104047
Coordinates   1637816..1638541 (-) Length   241 a.a.
NCBI ID   WP_003107549.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KSP10     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1632816..1643541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A96_RS08255 (N2A96_08255) rnpM 1632861..1633157 (-) 297 WP_003104517.1 RNase P modulator RnpM -
  N2A96_RS08260 (N2A96_08260) nusA 1633173..1634327 (-) 1155 WP_003108096.1 transcription termination factor NusA -
  N2A96_RS08265 (N2A96_08265) rimP 1634416..1634898 (-) 483 WP_003107545.1 ribosome maturation factor RimP -
  N2A96_RS08275 (N2A96_08275) trmB 1635292..1635927 (-) 636 WP_003107546.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  N2A96_RS08280 (N2A96_08280) ccrZ 1635927..1636718 (-) 792 WP_003107547.1 cell cycle regulator CcrZ -
  N2A96_RS08285 (N2A96_08285) - 1636779..1637813 (-) 1035 WP_003107548.1 ABC transporter permease -
  N2A96_RS08290 (N2A96_08290) pptA 1637816..1638541 (-) 726 WP_003107549.1 ABC transporter ATP-binding protein Regulator
  N2A96_RS08295 (N2A96_08295) - 1638803..1639222 (+) 420 WP_003107550.1 HIT family protein -
  N2A96_RS08300 (N2A96_08300) - 1639219..1639521 (+) 303 WP_003104696.1 hypothetical protein -
  N2A96_RS08305 (N2A96_08305) - 1639554..1640843 (-) 1290 WP_003107551.1 LCP family protein -
  N2A96_RS08310 (N2A96_08310) - 1640852..1641376 (-) 525 WP_003107553.1 GNAT family N-acetyltransferase -
  N2A96_RS08315 (N2A96_08315) tsaE 1641363..1641812 (-) 450 WP_003103132.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  N2A96_RS08320 (N2A96_08320) - 1641901..1643361 (-) 1461 WP_003104259.1 NCS2 family permease -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26906.34 Da        Isoelectric Point: 5.6444

>NTDB_id=727315 N2A96_RS08290 WP_003107549.1 1637816..1638541(-) (pptA) [Streptococcus parauberis strain KSP10]
MLKIENLTGGYINIPVLKDISFSVDAGQLVGLIGLNGAGKSTTINEIIGLLRPYKGSITIDGISLIDDKTAYRKKIGFIP
ETPSLYEELTLAEHIETIAMAYDIPVKEAHDRAKPLLKTYRLEDKLDWYPVHFSKGMKQKVMIICAFIIDPRLFILDEPF
LGLDPLAIADLIAYLDEEKKKGKSILMSTHVLDSAEKMCDRFVILHHGQIRAQGTLDDLRTTFGDNQASLNDIYLALTKE
A

Nucleotide


Download         Length: 726 bp        

>NTDB_id=727315 N2A96_RS08290 WP_003107549.1 1637816..1638541(-) (pptA) [Streptococcus parauberis strain KSP10]
ATGTTAAAAATTGAAAATCTGACAGGTGGTTATATTAATATCCCTGTTTTGAAGGACATTTCTTTTTCCGTAGATGCTGG
TCAATTAGTAGGATTAATTGGTTTGAATGGTGCAGGAAAATCAACGACAATCAATGAAATAATTGGTTTGTTAAGACCTT
ATAAAGGTAGCATTACCATTGATGGCATCTCCTTGATAGATGACAAAACAGCCTACAGGAAGAAAATTGGCTTTATACCC
GAAACACCAAGTCTTTACGAAGAATTGACCTTGGCTGAACACATTGAAACAATTGCCATGGCTTACGACATTCCAGTAAA
AGAAGCACATGATCGAGCAAAACCTTTATTGAAAACATATCGTTTGGAGGATAAATTGGATTGGTATCCCGTTCATTTTT
CTAAAGGAATGAAACAAAAAGTAATGATTATCTGTGCTTTTATTATTGATCCTAGGTTATTTATTCTAGATGAACCATTC
CTTGGCTTAGATCCGTTAGCAATTGCTGACTTAATTGCCTATTTGGACGAGGAAAAAAAGAAGGGCAAGTCAATTTTGAT
GAGTACACACGTTCTCGATTCTGCAGAAAAAATGTGTGATCGGTTTGTCATTTTACATCATGGACAAATCCGTGCCCAAG
GGACTTTGGACGATTTACGAACTACATTTGGTGATAACCAGGCTAGTCTAAATGATATATACTTAGCCTTGACCAAAGAG
GCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

73.64

99.17

0.73
  pptA Streptococcus salivarius strain HSISS4

73.222

99.17

0.726