Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   N2A96_RS07030 Genome accession   NZ_CP104047
Coordinates   1374950..1376752 (-) Length   600 a.a.
NCBI ID   WP_003107263.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KSP10     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1369950..1381752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A96_RS07000 (N2A96_07000) - 1370516..1370770 (-) 255 WP_231070381.1 hypothetical protein -
  N2A96_RS07005 (N2A96_07005) - 1370755..1370877 (-) 123 WP_003104426.1 hypothetical protein -
  N2A96_RS10530 - 1371129..1371701 (-) 573 Protein_1334 ECF transporter S component -
  N2A96_RS07015 (N2A96_07015) - 1372102..1372752 (-) 651 WP_003107256.1 HAD family phosphatase -
  N2A96_RS07020 (N2A96_07020) - 1372766..1374007 (-) 1242 WP_003107259.1 OFA family MFS transporter -
  N2A96_RS07025 (N2A96_07025) - 1374141..1374779 (-) 639 WP_003107261.1 HAD family phosphatase -
  N2A96_RS07030 (N2A96_07030) pepF 1374950..1376752 (-) 1803 WP_003107263.1 oligoendopeptidase F Regulator
  N2A96_RS07035 (N2A96_07035) - 1376778..1377713 (-) 936 WP_003107264.1 competence protein CoiA -
  N2A96_RS07040 (N2A96_07040) - 1377784..1378929 (-) 1146 WP_003107265.1 MFS transporter -
  N2A96_RS07045 (N2A96_07045) - 1379029..1379745 (-) 717 WP_003107266.1 pseudouridine synthase -
  N2A96_RS07050 (N2A96_07050) nagB 1379822..1380526 (-) 705 WP_003104983.1 glucosamine-6-phosphate deaminase -
  N2A96_RS07055 (N2A96_07055) queA 1380718..1381746 (+) 1029 WP_003107267.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69633.55 Da        Isoelectric Point: 4.6239

>NTDB_id=727308 N2A96_RS07030 WP_003107263.1 1374950..1376752(-) (pepF) [Streptococcus parauberis strain KSP10]
MIDNRSHLDEKYTWDLSTIFKTDEEFETELKVLNQDTDAAQKYAGHLLDSSKMLFEITNSQLELARRIEKVYVYASMKND
QDTTVAKYQEYQAKASSLYAKFGQVFSFYEPEFMTMSTEQLDTFKAEESQLELYNHYFEKLLKYKEHVLSQREEELLAGA
QEIFNGAEETFSILDNADLIFPIVKDDNGKEIEITHGNFISLMESKDRNVRKAAYEAMYSTYEQFQHTYAKTLQTNVKVQ
NYQARVHKYDSARQAAMSANFIPEAVYDTLLSSVNKHLPLLHRYLKLRQEVLGLDELKMYDVYTPLSETNLDMTYDEAIE
KVQTVLEVFGKEYSDRVNRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDNLDNLYTLIHETGHSLHSTLTREN
QPYVYGDYSIFLAEIASTTNENILTEALLKEVADDKTRFAILNNYLDGFRGSVFRQTQFAEFEHAIHQADQNGEVLTSEY
INNLYAELNQKYYGLAKEDNHFIQYEWARIPHFYYNYYVYQYSTGFAAASYLANKIVHGSQEDIDAYLSYLKAGNSDYPL
EVIAKAGVDMTQEDYLDQAFAVFEARLTELEELVAKGAHK

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=727308 N2A96_RS07030 WP_003107263.1 1374950..1376752(-) (pepF) [Streptococcus parauberis strain KSP10]
ATGATAGACAATCGTAGTCATTTAGATGAAAAGTACACTTGGGATTTAAGTACAATTTTCAAAACAGATGAAGAATTTGA
AACTGAACTAAAGGTCTTAAATCAGGATACTGATGCAGCGCAAAAATATGCTGGTCATTTATTAGATTCAAGTAAAATGT
TGTTTGAAATTACGAATAGTCAGCTTGAATTGGCGCGTCGCATTGAAAAAGTCTATGTTTATGCATCAATGAAAAACGAT
CAAGATACTACCGTAGCCAAATATCAAGAGTATCAAGCAAAAGCATCTAGTTTATATGCAAAATTTGGGCAAGTTTTCTC
ATTTTATGAGCCTGAATTTATGACCATGTCAACTGAACAATTAGATACTTTTAAAGCTGAAGAAAGTCAATTGGAACTTT
ACAATCACTACTTTGAAAAATTATTAAAATATAAAGAGCATGTTTTGTCTCAACGTGAGGAAGAACTTTTAGCTGGTGCA
CAAGAAATCTTTAATGGGGCAGAAGAAACATTTAGTATTTTGGATAATGCCGATTTGATATTCCCAATTGTGAAAGATGA
TAATGGTAAGGAAATTGAAATCACACATGGTAACTTTATCAGTTTGATGGAATCAAAAGATCGTAATGTGCGCAAAGCTG
CTTATGAAGCAATGTATAGTACTTATGAACAATTTCAACATACTTACGCCAAAACACTTCAAACAAATGTAAAAGTACAA
AACTATCAAGCGCGTGTTCATAAATATGACTCTGCTCGCCAAGCAGCAATGTCTGCAAATTTCATTCCTGAAGCAGTTTA
TGACACTTTACTTTCATCAGTAAATAAACATTTACCATTATTACATCGTTACTTGAAATTAAGACAAGAAGTTCTTGGTT
TGGATGAACTTAAAATGTATGATGTTTATACACCATTATCTGAGACAAATCTTGATATGACATATGATGAAGCAATTGAG
AAAGTACAAACTGTTTTAGAAGTGTTTGGTAAGGAATATTCAGACCGAGTAAATCGTGCATTCACAGAACGTTGGATTGA
TGTTCATGTTAATAAAGGTAAACGTTCAGGTGCCTATTCAGGTGGATCATATGATACAAATGCATTTATGCTACTTAACT
GGCAAGATAATCTTGATAACCTTTATACACTGATTCATGAAACTGGCCACAGCCTACATTCAACTTTAACTAGAGAAAAT
CAACCATATGTTTATGGTGATTATAGTATCTTCTTGGCAGAAATTGCATCGACAACAAATGAAAATATTTTAACTGAAGC
TCTATTGAAAGAAGTAGCTGATGATAAAACTCGTTTTGCCATTTTAAATAATTATTTGGATGGCTTTAGAGGTTCTGTTT
TCCGTCAAACTCAATTTGCTGAGTTTGAGCATGCGATTCACCAAGCTGATCAAAATGGTGAAGTCTTAACAAGTGAATAC
ATTAATAATTTATACGCCGAACTTAATCAAAAATATTATGGACTAGCTAAAGAAGATAATCATTTTATTCAATATGAGTG
GGCTAGAATTCCACATTTCTACTATAATTATTATGTTTATCAATACTCAACTGGTTTTGCTGCGGCAAGCTATTTAGCAA
ATAAAATTGTCCATGGAAGTCAAGAAGATATTGATGCTTATCTGTCATATTTGAAAGCAGGAAATTCTGATTACCCATTA
GAAGTCATTGCCAAAGCAGGTGTTGATATGACTCAAGAAGACTACTTGGATCAAGCATTCGCTGTTTTTGAAGCACGATT
AACTGAATTAGAAGAATTAGTTGCTAAAGGCGCGCACAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.119

99.833

0.71