Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N2A41_RS09890 Genome accession   NZ_CP104035
Coordinates   1965274..1965783 (+) Length   169 a.a.
NCBI ID   WP_222383952.1    Uniprot ID   -
Organism   Rhizobium sp. SRDI969     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1960274..1970783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A41_RS09875 (N2A41_09875) - 1960780..1961586 (-) 807 WP_222383949.1 DUF72 domain-containing protein -
  N2A41_RS09880 (N2A41_09880) - 1961611..1962072 (-) 462 WP_260110827.1 GNAT family N-acetyltransferase -
  N2A41_RS09885 (N2A41_09885) uvrA 1962069..1964990 (-) 2922 WP_260110828.1 excinuclease ABC subunit UvrA -
  N2A41_RS09890 (N2A41_09890) ssb 1965274..1965783 (+) 510 WP_222383952.1 single-stranded DNA-binding protein Machinery gene
  N2A41_RS09895 (N2A41_09895) - 1965904..1966551 (-) 648 WP_017964283.1 MarC family protein -
  N2A41_RS09900 (N2A41_09900) gyrA 1966788..1969622 (+) 2835 WP_017964284.1 DNA gyrase subunit A -
  N2A41_RS09905 (N2A41_09905) - 1969968..1970123 (-) 156 WP_003539654.1 hypothetical protein -
  N2A41_RS09910 (N2A41_09910) - 1970247..1970528 (-) 282 WP_222383953.1 hypothetical protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18080.82 Da        Isoelectric Point: 5.3175

>NTDB_id=727166 N2A41_RS09890 WP_222383952.1 1965274..1965783(+) (ssb) [Rhizobium sp. SRDI969]
MAGSVNKVILIGNVGADPEIRRTQDGRPIANIRLATSETWRDRNSGERREKTEWHAIVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQQGQDRYSTEVVLQGFGSTLTMLDGRGEGGGASGGRGSAGGGNDYGDDYGAPAPSSSPSRGGGGGGNFS
RDLDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=727166 N2A41_RS09890 WP_222383952.1 1965274..1965783(+) (ssb) [Rhizobium sp. SRDI969]
ATGGCTGGTAGTGTGAATAAGGTAATTCTGATTGGAAACGTCGGCGCGGACCCGGAAATCCGCCGCACTCAGGATGGCCG
GCCGATCGCCAATATCCGTCTTGCAACCTCGGAGACCTGGCGCGACCGCAATTCCGGCGAGCGCCGCGAAAAGACCGAAT
GGCACGCGATCGTCGTCTTCAACGAAGGCCTCTGCAAGGTCGTCGAGCAATATGTGAAGAAGGGCGCCAAGCTCTATATC
GAAGGCCAGCTGCAGACCCGCAAATGGCAGGACCAGCAGGGCCAGGACCGTTACAGCACGGAAGTGGTGCTGCAGGGTTT
CGGTTCGACGCTGACGATGCTCGACGGCCGCGGCGAAGGCGGCGGTGCGAGCGGCGGCCGTGGCAGCGCCGGTGGCGGCA
ACGATTATGGCGACGACTACGGCGCCCCGGCTCCCTCCTCATCACCCAGCCGCGGCGGTGGCGGCGGCGGCAACTTCTCG
CGGGATCTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.711

100

0.509
  ssb Glaesserella parasuis strain SC1401

43.455

100

0.491
  ssb Neisseria meningitidis MC58

39.011

100

0.42
  ssb Neisseria gonorrhoeae MS11

39.106

100

0.414