Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   P1K34_RS06800 Genome accession   NZ_CP119598
Coordinates   1372843..1373451 (+) Length   202 a.a.
NCBI ID   WP_002983622.1    Uniprot ID   P65998
Organism   Streptococcus pyogenes strain 1042     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1367843..1378451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1K34_RS06770 (P1K34_06770) - 1368090..1368572 (+) 483 WP_002988938.1 S-ribosylhomocysteine lyase -
  P1K34_RS06775 (P1K34_06775) - 1368717..1370186 (-) 1470 WP_023079255.1 cell division site-positioning protein MapZ family protein -
  P1K34_RS06780 (P1K34_06780) - 1370200..1371354 (-) 1155 WP_032464502.1 class I SAM-dependent RNA methyltransferase -
  P1K34_RS06790 (P1K34_06790) gpsB 1371799..1372125 (-) 327 WP_002983626.1 cell division regulator GpsB -
  P1K34_RS06795 (P1K34_06795) - 1372247..1372762 (-) 516 WP_023611633.1 DUF1273 domain-containing protein -
  P1K34_RS06800 (P1K34_06800) recU 1372843..1373451 (+) 609 WP_002983622.1 Holliday junction resolvase RecU Machinery gene
  P1K34_RS06805 (P1K34_06805) pbp1a 1373438..1375603 (+) 2166 WP_038434201.1 penicillin-binding protein PBP1A -
  P1K34_RS06810 (P1K34_06810) pepC 1376070..1377407 (-) 1338 WP_038434202.1 aminopeptidase C -
  P1K34_RS06815 (P1K34_06815) nadE 1377592..1378416 (-) 825 WP_276131604.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23356.93 Da        Isoelectric Point: 9.8725

>NTDB_id=727104 P1K34_RS06800 WP_002983622.1 1372843..1373451(+) (recU) [Streptococcus pyogenes strain 1042]
MVNYPHNLIRQKVSSVQKQTKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYF
RQASTTDYCGVYKGHYVDFEAKETRQKTAMPMKNFHLHQIEHMACVLHQKGICFVLLHFSTLKETYYLPAQALISFYQID
NGSKSMPIDYIRKNGFKVAFGAFPQVPYLNIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=727104 P1K34_RS06800 WP_002983622.1 1372843..1373451(+) (recU) [Streptococcus pyogenes strain 1042]
ATGGTTAATTATCCTCATAATCTTATTCGACAAAAAGTAAGTTCCGTTCAAAAGCAAACAAAGCAAAATAAGGTGGACTT
CGCCAATAGAGGTATGTCCTTTGAAGCTGCTATCAACGCGACAAATGATTATTATTTATCTCGTCAAATAGCTGTCATTC
ACAAAAAACCTACTCCTGTCCAAATTGTCAAAGTGGATTACCCTAAACGCAGTCGGGCAAAAATCGTTGAAGCGTACTTT
AGACAAGCTTCAACGACTGACTATTGCGGCGTTTATAAAGGACATTATGTTGATTTTGAAGCAAAAGAAACCAGGCAAAA
AACAGCTATGCCCATGAAAAATTTCCATTTACATCAGATTGAACATATGGCTTGCGTTTTACATCAAAAAGGAATCTGCT
TTGTCCTTCTTCACTTTTCCACACTGAAGGAGACTTACTACCTACCTGCTCAAGCCTTGATTTCATTTTATCAGATAGAT
AATGGCAGTAAATCGATGCCCATTGATTATATCAGAAAAAATGGCTTTAAGGTAGCATTTGGAGCCTTTCCACAAGTCCC
TTATTTAAACATAATTGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65998

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

97.525

0.5