Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N1249_RS07620 Genome accession   NZ_CP104014
Coordinates   1647239..1647865 (+) Length   208 a.a.
NCBI ID   WP_259836342.1    Uniprot ID   -
Organism   Enterobacter sp. CP102     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1642239..1652865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N1249_RS07600 (N1249_07600) - 1642636..1644396 (-) 1761 WP_259836333.1 Lon protease family protein -
  N1249_RS07605 (N1249_07605) matP 1644583..1645035 (+) 453 WP_259836336.1 macrodomain Ter protein MatP -
  N1249_RS07610 (N1249_07610) ompA 1645101..1646156 (-) 1056 WP_259836338.1 porin OmpA -
  N1249_RS07615 (N1249_07615) sulA 1646512..1647021 (-) 510 WP_259836340.1 SOS-induced cell division inhibitor SulA -
  N1249_RS07620 (N1249_07620) sxy/tfoX 1647239..1647865 (+) 627 WP_259836342.1 TfoX/Sxy family DNA transformation protein Regulator
  N1249_RS07625 (N1249_07625) yccS 1647822..1649984 (-) 2163 WP_259836344.1 YccS family putative transporter -
  N1249_RS07630 (N1249_07630) - 1650004..1650450 (-) 447 WP_259836347.1 YccF domain-containing protein -
  N1249_RS07635 (N1249_07635) helD 1650574..1652628 (+) 2055 WP_259836350.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24033.54 Da        Isoelectric Point: 6.8780

>NTDB_id=727019 N1249_RS07620 WP_259836342.1 1647239..1647865(+) (sxy/tfoX) [Enterobacter sp. CP102]
MKKISYERIYKSQEYLSELGDIHHRALFGGYTLAVDNAVFAMVSDGELYLRACEQSATYYVKHASSFLTLLKRGRPVLLN
YFRVDEGLWQDRGTLLQLSSFALEDARRERYQRYQRNRLKDLPNLTFQIEVLLFEVGITNEEMLRELGAKASWLKIRAQN
KQLGIKVLFALEGAIEGLHEAALPAEIRQELTEWFNALPEPAENRSAM

Nucleotide


Download         Length: 627 bp        

>NTDB_id=727019 N1249_RS07620 WP_259836342.1 1647239..1647865(+) (sxy/tfoX) [Enterobacter sp. CP102]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTTTCAGAACTGGGTGATATTCATCACCGCGCACT
CTTTGGTGGTTATACCCTGGCGGTTGATAACGCTGTTTTTGCCATGGTGTCTGATGGGGAACTTTATCTGCGTGCCTGTG
AGCAAAGCGCGACCTACTATGTGAAACACGCCTCCTCTTTTTTGACCCTTCTGAAGCGTGGTCGGCCCGTGCTGCTTAAC
TACTTCCGGGTTGATGAGGGGCTGTGGCAGGACAGGGGGACACTACTCCAGCTTTCTTCTTTTGCGCTTGAGGATGCCAG
GCGGGAGCGATATCAACGCTATCAGCGCAACCGGCTTAAAGACCTGCCCAATCTCACCTTCCAGATTGAGGTTCTGCTTT
TTGAAGTCGGGATCACTAACGAAGAAATGTTACGGGAGCTGGGGGCAAAAGCGAGCTGGCTGAAAATCAGAGCGCAAAAC
AAACAACTCGGGATTAAAGTGCTCTTTGCGCTTGAGGGGGCAATAGAAGGGTTGCATGAAGCGGCGCTCCCGGCGGAAAT
TCGCCAGGAGCTTACGGAGTGGTTTAACGCGTTGCCAGAGCCTGCGGAGAATCGTTCCGCCATGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567