Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   P1K87_RS18805 Genome accession   NZ_CP119596
Coordinates   3793114..3793803 (-) Length   229 a.a.
NCBI ID   WP_032875556.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MG-2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3788114..3798803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1K87_RS18785 (P1K87_18785) - 3789018..3789365 (-) 348 WP_004393256.1 YxeA family protein -
  P1K87_RS18790 (P1K87_18790) yxdM 3789379..3791247 (-) 1869 WP_032875565.1 ABC transporter permease YxdM -
  P1K87_RS18795 (P1K87_18795) yxdL 3791222..3791995 (-) 774 WP_032875562.1 ABC transporter ATP-binding protein YxdL -
  P1K87_RS18800 (P1K87_18800) yxdK 3792140..3793117 (-) 978 WP_032875559.1 two-component system sensor histidine kinase YxdK -
  P1K87_RS18805 (P1K87_18805) braR 3793114..3793803 (-) 690 WP_032875556.1 two-component system response regulator YxdJ Regulator
  P1K87_RS18810 (P1K87_18810) - 3793953..3795392 (-) 1440 WP_032875552.1 HAMP domain-containing sensor histidine kinase -
  P1K87_RS18815 (P1K87_18815) - 3795389..3796111 (-) 723 WP_007614840.1 response regulator transcription factor -
  P1K87_RS18820 (P1K87_18820) - 3796354..3797265 (+) 912 WP_007614842.1 ABC transporter ATP-binding protein -
  P1K87_RS18825 (P1K87_18825) - 3797262..3798020 (+) 759 WP_032875549.1 ABC transporter permease -
  P1K87_RS18830 (P1K87_18830) - 3798037..3798771 (+) 735 WP_223204429.1 ABC transporter permease -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26575.29 Da        Isoelectric Point: 4.8564

>NTDB_id=726935 P1K87_RS18805 WP_032875556.1 3793114..3793803(-) (braR) [Bacillus amyloliquefaciens strain MG-2]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVAAADFTAVLDVFLREKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQLRALS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=726935 P1K87_RS18805 WP_032875556.1 3793114..3793803(-) (braR) [Bacillus amyloliquefaciens strain MG-2]
ATGAATAAAATCATGATTGTGGAAGATAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACCGTGGCCGCCGCGGATTTCACGGCTGTTCTTGATGTTTTTTTGCGGGAAAAGCCTGATGTGGTGCTGCTTGATATCA
ATCTGCCGTCTTATGACGGCTATTATTGGTGCCGCCAGATCCGCCAGCATTCTACAAGCCCGATCATTTTCATCTCAGCC
AGAAGCGGGGAAATGGATCAAGTGATGGCGATTGAAAACGGCGGAGATGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGCAGGGCATACGGAGAGTACGCCGCCAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGTGTGCAGCTCTTTGTGGAACGGTTTGAACTGCGCTTTCAGGACGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTAGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAAACGTGGGACACCGA
CATTTTCGTCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CCATTGAATCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCTGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.807

97.38

0.397