Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N0B38_RS07390 Genome accession   NZ_CP104001
Coordinates   1606363..1606989 (+) Length   208 a.a.
NCBI ID   WP_023618860.1    Uniprot ID   A0A155YQ93
Organism   Enterobacter roggenkampii strain RX.G5M56     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1601363..1611989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N0B38_RS07370 (N0B38_07370) - 1601762..1603522 (-) 1761 WP_023327040.1 Lon protease family protein -
  N0B38_RS07375 (N0B38_07375) matP 1603709..1604161 (+) 453 WP_008499929.1 macrodomain Ter protein MatP -
  N0B38_RS07380 (N0B38_07380) ompA 1604226..1605281 (-) 1056 WP_008499928.1 porin OmpA -
  N0B38_RS07385 (N0B38_07385) sulA 1605636..1606145 (-) 510 WP_023618859.1 SOS-induced cell division inhibitor SulA -
  N0B38_RS07390 (N0B38_07390) sxy/tfoX 1606363..1606989 (+) 627 WP_023618860.1 TfoX/Sxy family DNA transformation protein Regulator
  N0B38_RS07395 (N0B38_07395) yccS 1606946..1609108 (-) 2163 WP_135346041.1 YccS family putative transporter -
  N0B38_RS07400 (N0B38_07400) - 1609128..1609574 (-) 447 WP_008499924.1 YccF domain-containing protein -
  N0B38_RS07405 (N0B38_07405) helD 1609698..1611752 (+) 2055 WP_259493457.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23898.49 Da        Isoelectric Point: 9.6439

>NTDB_id=726892 N0B38_RS07390 WP_023618860.1 1606363..1606989(+) (sxy/tfoX) [Enterobacter roggenkampii strain RX.G5M56]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARASWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQESRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=726892 N0B38_RS07390 WP_023618860.1 1606363..1606989(+) (sxy/tfoX) [Enterobacter roggenkampii strain RX.G5M56]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCGTTGGGCGAGATTCATCATCGCGCGCT
GTTTGGCGGTTACACCCTGGCAGTGGATGATGCGGTCTTTGCCATGGTGTCCGATGGCGAACTTTACCTTCGCGCGTGTG
AAGAGAGTGCAAAATACTGTGTAAAAAATGCTTCCTCCTTCTTGACGTTGATGAAGCGAGGCCGCCCGGTACTGCTCAAC
TATTATCGTGTGGATGACGGATTATGGCAGGACAGGGAGCGGTTGCTTCAGCTCTCCTCGTTTGCACTCAGTGCGGCAAG
GAAAGAGCGCTACCAGCGTCATCAACGAAACCGTCTTAAGGATCTGCCGAACCTGACCTTTCAGCTTGAAGTCTTGCTCT
TTGAAGCCGGTATCACCAATGAAGAAACGCTGCGGGCGCTGGGTGCCAGAGCGAGCTGGCTGAAGATGCGGGCAAAGAAT
AAAGCACTCAGCATAAAAGTGCTCTTTGCGTTGGAAGGAGCTATCGAAGGGCTGCATGAGGCGGCACTCCCGGCAGGTAT
CCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCGCAGGAGAGTCGTTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A155YQ93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567