Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   P1K87_RS08650 Genome accession   NZ_CP119596
Coordinates   1714846..1715277 (+) Length   143 a.a.
NCBI ID   WP_003154113.1    Uniprot ID   A7Z4X3
Organism   Bacillus amyloliquefaciens strain MG-2     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1709846..1720277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1K87_RS08630 (P1K87_08630) spoVS 1710416..1710676 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  P1K87_RS08635 (P1K87_08635) tdh 1710934..1711980 (+) 1047 WP_032874949.1 L-threonine 3-dehydrogenase -
  P1K87_RS08640 (P1K87_08640) - 1711993..1713171 (+) 1179 WP_087920765.1 glycine C-acetyltransferase -
  P1K87_RS08645 (P1K87_08645) miaB 1713314..1714843 (+) 1530 WP_003154116.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  P1K87_RS08650 (P1K87_08650) ymcA 1714846..1715277 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  P1K87_RS08655 (P1K87_08655) cotE 1715530..1716075 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  P1K87_RS08660 (P1K87_08660) hexA 1716194..1718779 (+) 2586 WP_032875230.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16082.22 Da        Isoelectric Point: 5.0213

>NTDB_id=726867 P1K87_RS08650 WP_003154113.1 1714846..1715277(+) (ymcA) [Bacillus amyloliquefaciens strain MG-2]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=726867 P1K87_RS08650 WP_003154113.1 1714846..1715277(+) (ymcA) [Bacillus amyloliquefaciens strain MG-2]
ATGACGCTTTACTCTAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTTAAACGCGCCGAGGCGCAGATTAACGAAAATGAAAAAGTCTCTGCGATTATTAATCAGATTAAAACCCTGCAAA
AGCAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAACAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATCATTACATCTACCGGAGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916