Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   P1K87_RS07675 Genome accession   NZ_CP119596
Coordinates   1510960..1511982 (+) Length   340 a.a.
NCBI ID   WP_007611255.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MG-2     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1505960..1516982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1K87_RS07640 (P1K87_07640) - 1506320..1506559 (+) 240 WP_003154475.1 YlbE-like family protein -
  P1K87_RS07645 (P1K87_07645) ylbF 1506630..1507079 (+) 450 WP_032874811.1 YlbF family regulator Regulator
  P1K87_RS07650 (P1K87_07650) - 1507138..1507410 (+) 273 WP_014417705.1 YlbG family protein -
  P1K87_RS07655 (P1K87_07655) rsmD 1507709..1508263 (+) 555 WP_007409693.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  P1K87_RS07660 (P1K87_07660) coaD 1508268..1508750 (+) 483 WP_014417707.1 pantetheine-phosphate adenylyltransferase -
  P1K87_RS07665 (P1K87_07665) ylbJ 1508769..1509995 (-) 1227 WP_032874813.1 sporulation integral membrane protein YlbJ -
  P1K87_RS07670 (P1K87_07670) - 1510175..1510954 (+) 780 WP_014304961.1 patatin family protein -
  P1K87_RS07675 (P1K87_07675) sepM 1510960..1511982 (+) 1023 WP_007611255.1 SepM family pheromone-processing serine protease Regulator
  P1K87_RS07680 (P1K87_07680) - 1512001..1513248 (-) 1248 WP_032874815.1 nucleotidyltransferase -
  P1K87_RS07685 (P1K87_07685) - 1513457..1513975 (+) 519 WP_007611260.1 DUF177 domain-containing protein -
  P1K87_RS07690 (P1K87_07690) rpmF 1513997..1514176 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  P1K87_RS07695 (P1K87_07695) gerR 1514333..1514908 (+) 576 WP_032874817.1 sporulation-specific transcriptional regulator GerR -
  P1K87_RS07700 (P1K87_07700) - 1514948..1515430 (-) 483 WP_007611262.1 N-acetyltransferase -
  P1K87_RS07705 (P1K87_07705) - 1515593..1516474 (+) 882 WP_032874819.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37424.93 Da        Isoelectric Point: 7.3836

>NTDB_id=726855 P1K87_RS07675 WP_007611255.1 1510960..1511982(+) (sepM) [Bacillus amyloliquefaciens strain MG-2]
MKAKHFRWVFIILILLIAVTFIKLPYYITQPGEASELRPLIKVDGGYPEKGSLSLMTVKVGPANPYTYLWAKVHPYDEIV
SDESIKEEGESDSDYMKRQLQMMKSSQENAVIAAYQKAGKQVKYSFNGIYASSVVSDMPAKGKIEVGDKIISADGKTYES
AEKLIDYISSKKAGEKVTFHIERDTKEKTVDIVLKSFPDDPKRAGIGVALYTDRNVKVKPDLHFSIENIGGPSAGLMMSL
EIYNQLTKPDETKGYNIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGAENSDYKNAVKTAKAIKSDMKIV
PVDTMQDALDYLDQLKVKST

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=726855 P1K87_RS07675 WP_007611255.1 1510960..1511982(+) (sepM) [Bacillus amyloliquefaciens strain MG-2]
ATGAAAGCAAAACATTTTCGCTGGGTGTTTATCATCCTGATCTTATTAATCGCTGTTACATTTATTAAGCTTCCGTATTA
CATCACACAGCCGGGAGAAGCATCAGAGCTGAGACCGCTGATTAAGGTGGACGGAGGTTATCCTGAAAAAGGAAGCCTTT
CCTTGATGACTGTCAAAGTAGGCCCCGCCAATCCGTATACATATCTTTGGGCGAAAGTGCATCCTTACGATGAAATCGTC
TCTGATGAAAGCATAAAAGAAGAGGGCGAATCGGACTCGGATTATATGAAGCGCCAGCTGCAAATGATGAAAAGCTCCCA
AGAAAACGCGGTCATTGCCGCTTATCAAAAAGCCGGGAAACAGGTGAAATACTCATTTAACGGCATTTATGCCAGTTCAG
TCGTCTCTGACATGCCGGCAAAAGGAAAAATAGAGGTCGGTGATAAAATCATCAGCGCGGACGGGAAAACATACGAATCC
GCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGGGAAAAAGTAACGTTTCACATTGAACGGGACACGAAAGA
AAAGACCGTTGACATTGTGCTGAAATCATTCCCGGACGACCCGAAAAGAGCGGGAATCGGCGTCGCATTATATACGGACC
GGAACGTGAAAGTGAAGCCGGATCTTCATTTCAGCATTGAAAACATCGGCGGGCCTTCTGCGGGTCTCATGATGTCTTTA
GAAATTTACAACCAGCTGACAAAACCTGACGAAACAAAAGGCTATAATATAGCCGGAACGGGGACAATCGACGTGGACGG
CAAAGTCGGACCGATCGGCGGAATCGATCAGAAAGTCGTCGCCGCAGACAAAGCGGGAAAAGATATTTTCTTTGCGCCGA
ATCAAAACGGAGCTGAAAATTCTGATTACAAAAATGCGGTAAAAACGGCGAAAGCAATCAAGTCCGATATGAAGATCGTC
CCTGTCGACACCATGCAGGACGCACTTGACTATTTGGATCAGCTGAAAGTAAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(230-330)

PDZ domain (PDZ_2)

(127-193)

Peptidase family M50 (Peptidase_M50)

(100-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

38.596

100

0.388