Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   N0B18_RS08645 Genome accession   NZ_CP103995
Coordinates   1614032..1614310 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain SRCM117109     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1609032..1619310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N0B18_RS08625 (N0B18_08625) panEB 1610220..1611131 (+) 912 WP_014479685.1 ketopantoate reductase family protein -
  N0B18_RS08630 (N0B18_08630) ampS 1611165..1612397 (-) 1233 WP_003232341.1 aminopeptidase -
  N0B18_RS08635 (N0B18_08635) ykpC 1612506..1612640 (-) 135 WP_003238865.1 protein YkpC -
  N0B18_RS08640 (N0B18_08640) mreBH 1612741..1613748 (-) 1008 WP_069964461.1 cell shape-determining protein MreBH -
  N0B18_RS08645 (N0B18_08645) abrB 1614032..1614310 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  N0B18_RS08650 (N0B18_08650) kinC 1614500..1615786 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  N0B18_RS08655 (N0B18_08655) ykqA 1615802..1616635 (+) 834 WP_014479687.1 gamma-glutamylcyclotransferase -
  N0B18_RS08660 (N0B18_08660) ktrC 1616698..1617363 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  N0B18_RS08665 (N0B18_08665) ade 1617518..1619251 (+) 1734 WP_069837481.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=726831 N0B18_RS08645 WP_003244728.1 1614032..1614310(+) (abrB) [Bacillus subtilis strain SRCM117109]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=726831 N0B18_RS08645 WP_003244728.1 1614032..1614310(+) (abrB) [Bacillus subtilis strain SRCM117109]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576