Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   N0B18_RS05885 Genome accession   NZ_CP103995
Coordinates   1134054..1134632 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain SRCM117109     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1129054..1139632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N0B18_RS22920 - 1129574..1130089 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  N0B18_RS22925 - 1130378..1130956 (-) 579 Protein_1092 protoglobin domain-containing protein -
  N0B18_RS05870 (N0B18_05870) comW 1131011..1132539 (-) 1529 Protein_1093 FAD-dependent oxidoreductase -
  N0B18_RS05875 (N0B18_05875) yhxC 1132643..1133500 (+) 858 WP_014479371.1 SDR family oxidoreductase -
  N0B18_RS05880 (N0B18_05880) yhzC 1133528..1133761 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  N0B18_RS05885 (N0B18_05885) comK 1134054..1134632 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  N0B18_RS05890 (N0B18_05890) yhxD 1134677..1135576 (-) 900 WP_014479372.1 SDR family oxidoreductase -
  N0B18_RS05895 (N0B18_05895) yhjA 1135793..1136062 (+) 270 WP_014479373.1 excalibur calcium-binding domain-containing protein -
  N0B18_RS05900 (N0B18_05900) yhjB 1136106..1137575 (-) 1470 WP_014479374.1 sodium:solute symporter -
  N0B18_RS05905 (N0B18_05905) yhjC 1137572..1137772 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  N0B18_RS05910 (N0B18_05910) - 1137971..1138342 (-) 372 WP_014476361.1 hypothetical protein -
  N0B18_RS05915 (N0B18_05915) yhjE 1138494..1139117 (+) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  N0B18_RS05920 (N0B18_05920) lepB 1139119..1139625 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=726817 N0B18_RS05885 WP_003245329.1 1134054..1134632(+) (comK) [Bacillus subtilis strain SRCM117109]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=726817 N0B18_RS05885 WP_003245329.1 1134054..1134632(+) (comK) [Bacillus subtilis strain SRCM117109]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATATGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1