Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   N0B18_RS00245 Genome accession   NZ_CP103995
Coordinates   43712..44002 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain SRCM117109     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 38712..49002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N0B18_RS00205 (N0B18_00205) darA 38735..39064 (+) 330 WP_003242755.1 cyclic di-AMP receptor DarA -
  N0B18_RS00210 (N0B18_00210) yaaR 39077..39517 (+) 441 WP_009966249.1 YaaR family protein -
  N0B18_RS00215 (N0B18_00215) holB 39529..40518 (+) 990 WP_003226770.1 DNA polymerase III subunit delta' -
  N0B18_RS00220 (N0B18_00220) ricT 40521..41348 (+) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  N0B18_RS00225 (N0B18_00225) yabA 41363..41722 (+) 360 WP_003218308.1 replication initiation-control protein YabA -
  N0B18_RS00230 (N0B18_00230) trmNF 41781..42524 (+) 744 WP_041338388.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  N0B18_RS00235 (N0B18_00235) yazA 42511..42810 (+) 300 WP_069837179.1 GIY-YIG nuclease family protein -
  N0B18_RS00240 (N0B18_00240) rsmI 42785..43663 (+) 879 WP_019712967.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  N0B18_RS00245 (N0B18_00245) abrB 43712..44002 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  N0B18_RS00250 (N0B18_00250) metG 44497..46491 (+) 1995 WP_069963935.1 methionine--tRNA ligase -
  N0B18_RS00255 (N0B18_00255) dayD 46571..47338 (+) 768 WP_014478595.1 TatD family hydrolase -
  N0B18_RS00260 (N0B18_00260) yabE 47494..48807 (+) 1314 WP_069963936.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=726802 N0B18_RS00245 WP_003226760.1 43712..44002(-) (abrB) [Bacillus subtilis strain SRCM117109]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=726802 N0B18_RS00245 WP_003226760.1 43712..44002(-) (abrB) [Bacillus subtilis strain SRCM117109]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1