Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NZD79_RS22385 Genome accession   NZ_CP103972
Coordinates   4603504..4604133 (+) Length   209 a.a.
NCBI ID   WP_259568165.1    Uniprot ID   -
Organism   Escherichia coli strain DLI.5a     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4598504..4609133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NZD79_RS22365 (NZD79_22365) ycbZ 4598905..4600665 (-) 1761 WP_000156518.1 Lon protease family protein -
  NZD79_RS22370 (NZD79_22370) matP 4600851..4601303 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  NZD79_RS22375 (NZD79_22375) ompA 4601379..4602419 (-) 1041 WP_000750416.1 porin OmpA -
  NZD79_RS22380 (NZD79_22380) sulA 4602776..4603285 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  NZD79_RS22385 (NZD79_22385) sxy/tfoX 4603504..4604133 (+) 630 WP_259568165.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NZD79_RS22390 (NZD79_22390) yccS 4604096..4606258 (-) 2163 WP_000875061.1 YccS family putative transporter -
  NZD79_RS22395 (NZD79_22395) yccF 4606268..4606714 (-) 447 WP_001261235.1 YccF domain-containing protein -
  NZD79_RS22400 (NZD79_22400) helD 4606837..4608891 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24161.04 Da        Isoelectric Point: 9.2180

>NTDB_id=726738 NZD79_RS22385 WP_259568165.1 4603504..4604133(+) (sxy/tfoX) [Escherichia coli strain DLI.5a]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLTKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=726738 NZD79_RS22385 WP_259568165.1 4603504..4604133(+) (sxy/tfoX) [Escherichia coli strain DLI.5a]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGACGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995