Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FGKAn22_RS04115 Genome accession   NZ_AP019536
Coordinates   852714..854072 (+) Length   452 a.a.
NCBI ID   WP_212786714.1    Uniprot ID   A0AAN1SY31
Organism   Ferrigenium kumadai strain An22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 847714..859072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGKAn22_RS04090 (FGKAn22_08060) - 847950..848510 (+) 561 WP_212786709.1 diheme cytochrome c -
  FGKAn22_RS04095 (FGKAn22_08070) - 848571..850142 (-) 1572 WP_212786710.1 DHA2 family efflux MFS transporter permease subunit -
  FGKAn22_RS04100 (FGKAn22_08080) - 850139..851389 (-) 1251 WP_212786711.1 efflux RND transporter periplasmic adaptor subunit -
  FGKAn22_RS04105 (FGKAn22_08090) - 851436..851735 (-) 300 WP_212786712.1 DUF1540 domain-containing protein -
  FGKAn22_RS04110 - 852310..852603 (+) 294 WP_212786713.1 hypothetical protein -
  FGKAn22_RS04115 (FGKAn22_08110) radA 852714..854072 (+) 1359 WP_212786714.1 DNA repair protein RadA Machinery gene
  FGKAn22_RS04120 (FGKAn22_08120) - 854160..856592 (+) 2433 WP_212786715.1 acyl-CoA dehydrogenase -
  FGKAn22_RS04125 (FGKAn22_08130) - 856592..857413 (+) 822 WP_212786716.1 NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48455.93 Da        Isoelectric Point: 7.2042

>NTDB_id=72672 FGKAn22_RS04115 WP_212786714.1 852714..854072(+) (radA) [Ferrigenium kumadai strain An22]
MAKAKTIYSCTECGGQTPKWQGQCPHCMAWNTLVESVAEPAAKGGNRFSALAASGQVQRLSEVEAAEVPRTPTGIAEFDR
VLGGGLVEGAVVLIGGDPGIGKSTLLLQVLAHLSNQQNTLYVSGEESAQQIALRAKRLSLDAQGLRLLPEIQLEKIQSTI
AQDKPDVVVIDSIQTVYSEQLTSAPGSVAQVRECAAQLTRIAKSSGITMILVGHVTKEGALAGPRVLEHIVDTVLYFEGD
THSSFRLIRAFKNRFGAVNELGVFAMTEKGLREVSNPSALFLSQHGEQVAGSCVMVTQEGTRPLLVEIQALLDEAHSPNV
RRLSLGLEQNRLAMLLAVLHRHAGIACFDQDVFINAVGGVKITEPGADLAVILAMVSSLRNKPLPEKLVVFGEVGLAGEV
RPVQRGQERLKEAAKLGFTHAIIPKANAPKQKIAGMEIIAVERVEQAVERMR

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=72672 FGKAn22_RS04115 WP_212786714.1 852714..854072(+) (radA) [Ferrigenium kumadai strain An22]
ATGGCGAAGGCGAAAACGATTTATTCCTGCACCGAGTGCGGGGGGCAGACACCGAAGTGGCAGGGGCAGTGCCCGCACTG
CATGGCATGGAACACGCTGGTCGAGTCGGTCGCGGAGCCTGCAGCAAAAGGCGGCAACCGTTTCAGCGCGCTGGCGGCGA
GCGGCCAGGTGCAGAGACTCTCCGAAGTCGAGGCGGCGGAAGTACCGCGCACCCCGACGGGCATCGCCGAGTTCGACCGC
GTCCTGGGCGGCGGGCTGGTGGAAGGCGCGGTGGTGCTGATCGGCGGCGACCCGGGCATCGGCAAGTCCACCCTGCTGCT
GCAAGTGCTTGCGCATCTCTCGAATCAGCAGAACACTCTCTACGTCAGCGGCGAGGAATCGGCGCAGCAGATCGCGCTGC
GCGCAAAGCGCCTGTCGCTCGATGCGCAAGGCCTGCGACTGCTGCCCGAGATCCAGCTCGAGAAGATCCAGTCCACCATC
GCGCAGGACAAGCCGGACGTGGTGGTGATCGACTCCATCCAGACCGTGTATTCCGAGCAACTTACTTCCGCGCCCGGCTC
TGTCGCGCAGGTGCGCGAGTGCGCCGCGCAGCTCACCCGCATCGCCAAGAGCAGCGGCATCACCATGATCCTCGTCGGTC
ACGTCACCAAAGAGGGTGCGCTGGCGGGCCCTCGCGTGCTGGAACACATCGTCGACACGGTACTGTATTTCGAGGGCGAC
ACGCATTCCAGCTTCCGCCTGATACGTGCGTTCAAGAACCGCTTTGGCGCGGTCAATGAACTCGGCGTGTTCGCGATGAC
CGAGAAGGGGCTGCGCGAGGTGAGCAATCCATCCGCGCTGTTTCTGTCGCAGCACGGCGAGCAGGTCGCCGGTTCCTGCG
TGATGGTCACGCAGGAAGGCACGCGTCCTCTGCTGGTGGAGATACAGGCGCTGCTCGATGAAGCGCATTCGCCCAACGTT
CGACGCTTGTCGCTCGGGCTGGAGCAGAATCGCCTCGCAATGCTGCTTGCCGTGCTGCACCGCCACGCGGGTATCGCCTG
TTTCGACCAGGACGTGTTCATCAACGCCGTGGGCGGCGTGAAGATCACCGAGCCGGGCGCGGACCTCGCGGTGATCCTCG
CCATGGTCTCCAGCCTGCGCAACAAGCCGCTGCCTGAAAAGCTGGTGGTGTTCGGCGAAGTGGGGCTGGCGGGCGAGGTG
CGCCCGGTGCAGCGCGGGCAGGAACGCCTGAAAGAGGCCGCCAAGCTCGGCTTTACCCACGCCATCATCCCGAAGGCCAA
CGCGCCCAAGCAGAAGATTGCGGGCATGGAGATCATTGCGGTGGAGCGTGTCGAACAGGCGGTCGAGCGCATGCGCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(75-219)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(358-449)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.982

100

0.522
  radA Streptococcus pneumoniae Rx1

46.491

100

0.469
  radA Streptococcus pneumoniae D39

46.491

100

0.469
  radA Streptococcus pneumoniae R6

46.491

100

0.469
  radA Streptococcus pneumoniae TIGR4

46.491

100

0.469
  radA Streptococcus mitis NCTC 12261

46.593

100

0.469
  radA Streptococcus mitis SK321

46.593

100

0.469

Multiple sequence alignment