Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   NYP20_RS27500 Genome accession   NZ_CP103965
Coordinates   6229574..6229978 (-) Length   134 a.a.
NCBI ID   WP_259497264.1    Uniprot ID   -
Organism   Pseudomonas sp. N3-W     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6224574..6234978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYP20_RS27485 (NYP20_27485) - 6226386..6228440 (-) 2055 WP_259497261.1 methyl-accepting chemotaxis protein -
  NYP20_RS27490 (NYP20_27490) - 6228586..6229140 (-) 555 WP_259497262.1 chemotaxis protein CheW -
  NYP20_RS27495 (NYP20_27495) pilH 6229137..6229517 (-) 381 WP_259497263.1 twitching motility response regulator PilH -
  NYP20_RS27500 (NYP20_27500) pilG 6229574..6229978 (-) 405 WP_259497264.1 twitching motility response regulator PilG Regulator
  NYP20_RS27505 (NYP20_27505) gshB 6230202..6231155 (+) 954 WP_259497265.1 glutathione synthase -
  NYP20_RS27510 (NYP20_27510) - 6231233..6232132 (+) 900 WP_259497266.1 energy transducer TonB -
  NYP20_RS27515 (NYP20_27515) - 6232403..6232975 (+) 573 WP_259497267.1 YqgE/AlgH family protein -
  NYP20_RS27520 (NYP20_27520) ruvX 6232975..6233412 (+) 438 WP_005792259.1 Holliday junction resolvase RuvX -
  NYP20_RS27525 (NYP20_27525) pyrR 6233503..6234009 (+) 507 WP_259497268.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14564.98 Da        Isoelectric Point: 7.1345

>NTDB_id=726686 NYP20_RS27500 WP_259497264.1 6229574..6229978(-) (pilG) [Pseudomonas sp. N3-W]
MEQQSSALKVMVIDDSKTIRRTAETLLKNVGCEVITAIDGFDALAKIADNHPGIIFVDIMMPRLDGYQTCALIKNNSAFK
ATPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLNAIQAHVPGFAAVLPQ

Nucleotide


Download         Length: 405 bp        

>NTDB_id=726686 NYP20_RS27500 WP_259497264.1 6229574..6229978(-) (pilG) [Pseudomonas sp. N3-W]
ATGGAACAGCAGTCCAGCGCCTTGAAGGTCATGGTGATCGATGATTCGAAGACGATTCGCCGTACCGCCGAAACGCTATT
GAAGAACGTGGGCTGTGAGGTGATCACGGCCATCGACGGTTTCGACGCGCTGGCCAAGATTGCCGACAATCATCCCGGCA
TCATCTTCGTCGATATCATGATGCCGCGCCTGGATGGTTATCAGACCTGCGCTTTAATCAAGAACAACAGTGCGTTCAAG
GCGACGCCAGTGATCATGCTGTCGTCCAAGGACGGGCTGTTCGACAAGGCCAAGGGACGGATCGTCGGTTCTGATCAGTT
TCTGACCAAACCGTTCAGCAAGGAAGAACTGCTGAACGCGATCCAGGCCCATGTTCCGGGCTTCGCCGCCGTTTTGCCGC
AGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76

93.284

0.709