Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NYP20_RS25370 Genome accession   NZ_CP103965
Coordinates   5769276..5770643 (-) Length   455 a.a.
NCBI ID   WP_259496774.1    Uniprot ID   -
Organism   Pseudomonas sp. N3-W     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5764276..5775643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYP20_RS25345 (NYP20_25345) - 5764414..5765106 (+) 693 WP_259496764.1 GntR family transcriptional regulator -
  NYP20_RS25350 (NYP20_25350) yjiA 5765205..5766176 (-) 972 WP_259496765.1 GTPase -
  NYP20_RS25355 (NYP20_25355) - 5766348..5766545 (-) 198 WP_007895266.1 YbdD/YjiX family protein -
  NYP20_RS25360 (NYP20_25360) - 5766561..5768627 (-) 2067 WP_259496766.1 carbon starvation CstA family protein -
  NYP20_RS25365 (NYP20_25365) - 5768787..5769155 (+) 369 WP_259496767.1 PilZ domain-containing protein -
  NYP20_RS25370 (NYP20_25370) radA 5769276..5770643 (-) 1368 WP_259496774.1 DNA repair protein RadA Machinery gene
  NYP20_RS25375 (NYP20_25375) - 5770689..5771234 (-) 546 WP_259496776.1 ankyrin repeat domain-containing protein -
  NYP20_RS25380 (NYP20_25380) katB 5771294..5772835 (-) 1542 WP_259496779.1 catalase KatB -
  NYP20_RS25385 (NYP20_25385) mscL 5773123..5773536 (+) 414 WP_259496780.1 large-conductance mechanosensitive channel protein MscL -
  NYP20_RS25390 (NYP20_25390) - 5773582..5774358 (-) 777 WP_259496782.1 ferredoxin--NADP reductase -
  NYP20_RS25395 (NYP20_25395) - 5774725..5775438 (+) 714 WP_259496783.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48761.24 Da        Isoelectric Point: 7.1316

>NTDB_id=726683 NYP20_RS25370 WP_259496774.1 5769276..5770643(-) (radA) [Pseudomonas sp. N3-W]
MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWTGQQAQIKTLAEVSVEEIPRFSTASSEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDKLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=726683 NYP20_RS25370 WP_259496774.1 5769276..5770643(-) (radA) [Pseudomonas sp. N3-W]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCTCAACCTTCCCCAAGTGGGCCGGCCAGTGCGGCGAGTG
CGGGGCCTGGAACACCCTGACCGAAACCATGGTGGAAAGCGGCGGCGCGGCGGCCCCCAGCGGGCGAACCGGCTGGACCG
GCCAGCAGGCGCAGATCAAGACCCTGGCTGAAGTCAGCGTCGAAGAAATCCCGCGTTTTTCCACGGCTTCCAGCGAACTC
GACCGGGTGCTGGGCGGCGGTCTGGTGGACGGTTCTGTGGTGCTGATCGGCGGTGATCCCGGCATCGGCAAATCGACGAT
TCTGTTGCAAACCTTGTGCAACCTCGCCAAGAGCATGCCGGCGCTCTACGTCACCGGCGAAGAGTCCCAGCAACAGGTGG
CCATGCGCGCCCGTCGCCTCGGTTTGCCTCAGGACAAGCTGCGGGTGATGACCGAAACCTGCATCGAAACCATCATTGCC
ACGGCCCGCCAGGAAAAGCCCAAGGTGATGGTGATCGACTCGATCCAGACGATCTTCACCGAACAATTGCAATCGGCACC
GGGTGGCGTGTCCCAGGTGCGCGAAAGTGCGGCGTTGCTGGTGCGTTATGCCAAGCAGAGCGGCACGGCGATTTTCCTGG
TGGGTCACGTCACCAAGGAAGGCGCACTGGCCGGTCCCCGCGTGCTGGAGCACATGGTTGATACCGTGCTGTATTTCGAA
GGCGAGTCTGACGGGCGACTGCGTTTGCTGCGGGCGGTGAAAAACCGTTTCGGCGCGGTAAACGAGCTGGGCGTGTTCGG
CATGACTGACAAGGGCCTGAAAGAAGTCTCCAACCCGTCTGCGATATTTCTTACCCGCGCTCAGGAAGAAGTCCCGGGCA
GTGTGGTCATGGCGACGTGGGAAGGCACGCGACCGATGCTGGTGGAAGTTCAGGCGCTGGTGGATGACAGTCACCTGGCC
AACCCGCGCCGGGTGACGCTGGGCCTGGATCAGAATCGTCTGGCGATGTTGCTGGCGGTGCTGCATCGTCACGGTGGCAT
TCCGACCCACGATCAAGACGTGTTCCTCAATGTGGTCGGCGGGGTGAAGGTGCTGGAAACCGCATCCGATCTGGCGCTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCACTGCCGCATGACTTGCTGGTGTTCGGGGAAGTCGGATTGTCCGGC
GAAGTGCGCCCGGTGCCGAGCGGTCAGGAGCGGCTGAAAGAGGCGGCCAAACACGGCTTCAAACGTGCCATCGTGCCCAA
GGGCAATGCACCGAAGGAAGCGCCACCGGGTTTGCAGATTATTGCCGTGACCCGCCTCGAACAGGCCCTCGACGCACTGT
TCGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(74-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus pneumoniae Rx1

46.522

100

0.47
  radA Streptococcus pneumoniae R6

46.522

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.522

100

0.47
  radA Streptococcus pneumoniae D39

46.522

100

0.47
  radA Streptococcus mitis SK321

46.711

100

0.468
  radA Streptococcus mitis NCTC 12261

46.491

100

0.466