Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NZD48_RS11130 Genome accession   NZ_CP103964
Coordinates   2268605..2269978 (-) Length   457 a.a.
NCBI ID   WP_259489158.1    Uniprot ID   -
Organism   Staphylococcus hyicus strain MM2101     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2263605..2274978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NZD48_RS11105 (NZD48_11105) cysE 2263839..2264465 (-) 627 WP_168429109.1 serine O-acetyltransferase -
  NZD48_RS11110 (NZD48_11110) gltX 2264790..2266244 (-) 1455 WP_259489155.1 glutamate--tRNA ligase -
  NZD48_RS11115 (NZD48_11115) ispF 2266357..2266833 (-) 477 WP_259489156.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  NZD48_RS11120 (NZD48_11120) ispD 2266826..2267524 (-) 699 WP_259489157.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  NZD48_RS11125 (NZD48_11125) - 2267527..2268588 (-) 1062 WP_252540536.1 PIN/TRAM domain-containing protein -
  NZD48_RS11130 (NZD48_11130) radA 2268605..2269978 (-) 1374 WP_259489158.1 DNA repair protein RadA Machinery gene
  NZD48_RS11135 (NZD48_11135) - 2270181..2272658 (-) 2478 WP_119635492.1 ATP-dependent Clp protease ATP-binding subunit -
  NZD48_RS11140 (NZD48_11140) - 2272671..2273675 (-) 1005 WP_082021559.1 protein arginine kinase -
  NZD48_RS11145 (NZD48_11145) - 2273668..2274189 (-) 522 WP_310794668.1 UvrB/UvrC motif-containing protein -
  NZD48_RS11150 (NZD48_11150) - 2274201..2274662 (-) 462 WP_039647067.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50305.94 Da        Isoelectric Point: 8.0136

>NTDB_id=726661 NZD48_RS11130 WP_259489158.1 2268605..2269978(-) (radA) [Staphylococcus hyicus strain MM2101]
MAKKKITFECTACGYQSPKWMGKCPNCGAWNSMEESLEQKVAHPKHGVRTQKTTHAKVQTLNEIKNEKTPRILTNSDEFN
RVLGGGIVQGSLVLIGGDPGIGKSTLLLQMCAALSKKKKVLYITGEESLNQTKLRADRLDEDASALNVFAETDLEVIHEA
VKKVEPELIVVDSIQTIYHPEISSAPGSVSQVRESTQSLMHIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEG
DEHHAYRILRAVKNRFGSTNEMGIFEMKQAGLKSVPNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQALVTPTTFNN
PRRMATGIDHNRLSLLMAVLEKKEGYLLQQQDAYIKVAGGVKLSEPAVDLGVIIATASSFKDQAVDGLDCFIGEVGLTGE
VRRVSRIEQRVQEAAKLGFKRVIISKTNIGGWTFPENIEVIGVTSTHEALKYALKQR

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=726661 NZD48_RS11130 WP_259489158.1 2268605..2269978(-) (radA) [Staphylococcus hyicus strain MM2101]
GTGGCCAAAAAAAAGATTACATTTGAATGTACTGCATGCGGATATCAGTCTCCAAAATGGATGGGGAAATGTCCAAATTG
CGGTGCATGGAATTCAATGGAGGAATCATTAGAACAAAAAGTAGCACATCCAAAACATGGTGTGCGTACACAAAAAACGA
CACATGCGAAAGTACAAACGTTAAATGAAATTAAAAATGAAAAAACACCACGCATTCTTACAAATAGTGATGAGTTTAAT
CGTGTACTTGGAGGCGGTATTGTTCAAGGTTCTCTCGTATTGATCGGTGGCGACCCAGGTATCGGTAAATCCACACTACT
CCTTCAAATGTGTGCTGCGTTATCAAAGAAGAAAAAAGTGCTTTATATTACAGGCGAAGAATCACTGAACCAAACCAAAT
TACGTGCAGACCGTTTGGATGAAGATGCCAGTGCGTTGAATGTATTTGCAGAAACAGACCTTGAAGTGATTCACGAGGCA
GTTAAAAAAGTAGAACCTGAGTTAATCGTCGTGGACTCTATTCAAACGATATACCATCCTGAAATTAGTTCTGCACCAGG
ATCGGTGTCCCAAGTGAGAGAAAGTACTCAAAGTCTGATGCATATTGCGAAACAAATGAATATCGCCACATTTATTGTTG
GGCATGTGACGAAAGAAGGTCAAATCGCTGGACCGAGATTGTTAGAACATATGGTGGATACGGTGTTGTATTTCGAAGGA
GACGAACATCATGCGTATCGTATTTTACGTGCCGTTAAAAATCGGTTTGGTTCAACGAATGAAATGGGTATTTTTGAAAT
GAAGCAAGCTGGTTTAAAAAGTGTCCCAAATCCCTCTGAAATGTTTTTAGAAGAGCGTTCAACGAATGTGCCAGGGTCTA
CGATTGTTGCGACGATGGAAGGGACACGCCCTTTACTTATTGAAGTGCAAGCGTTAGTTACACCTACAACATTTAACAAC
CCAAGACGCATGGCCACAGGGATAGATCATAACCGTCTTAGTTTATTAATGGCTGTGTTAGAGAAAAAAGAGGGGTATTT
ATTACAACAACAGGATGCATACATTAAAGTTGCAGGTGGTGTCAAATTAAGTGAGCCCGCTGTGGATTTAGGTGTCATTA
TTGCGACTGCTTCAAGTTTTAAAGATCAAGCAGTTGACGGATTAGATTGTTTTATTGGTGAAGTTGGCTTAACTGGCGAA
GTACGCAGAGTGTCACGTATCGAGCAACGTGTACAAGAAGCGGCGAAGTTAGGTTTTAAACGTGTCATTATCTCAAAAAC
CAATATCGGTGGATGGACATTTCCAGAAAATATAGAAGTTATCGGTGTGACTTCAACACATGAAGCTTTAAAATATGCCT
TAAAACAGAGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(346-428)

AAA domain (AAA_25)

(68-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.789

99.781

0.656
  radA Streptococcus pneumoniae Rx1

59.735

98.906

0.591
  radA Streptococcus pneumoniae D39

59.735

98.906

0.591
  radA Streptococcus pneumoniae R6

59.735

98.906

0.591
  radA Streptococcus pneumoniae TIGR4

59.735

98.906

0.591
  radA Streptococcus mitis NCTC 12261

59.735

98.906

0.591
  radA Streptococcus mitis SK321

59.735

98.906

0.591