Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   NZD48_RS04230 Genome accession   NZ_CP103964
Coordinates   900599..901321 (-) Length   240 a.a.
NCBI ID   WP_039644708.1    Uniprot ID   -
Organism   Staphylococcus hyicus strain MM2101     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 895599..906321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NZD48_RS04210 (NZD48_04210) - 896550..897185 (+) 636 WP_039644703.1 redox-sensing transcriptional repressor Rex -
  NZD48_RS04215 (NZD48_04215) - 897367..898449 (+) 1083 WP_259490199.1 YeeE/YedE family protein -
  NZD48_RS04220 (NZD48_04220) - 898474..898698 (+) 225 WP_039644706.1 sulfurtransferase TusA family protein -
  NZD48_RS04225 (NZD48_04225) - 899036..900535 (+) 1500 WP_259490201.1 sucrose-6-phosphate hydrolase -
  NZD48_RS04230 (NZD48_04230) agrA 900599..901321 (-) 723 WP_039644708.1 quorum-sensing response regulator AgrA Regulator
  NZD48_RS04235 (NZD48_04235) agrC 901335..902633 (-) 1299 WP_259490204.1 quorum-sensing sensor histidine kinase AgrC -
  NZD48_RS04240 (NZD48_04240) agrD 902663..902797 (-) 135 WP_259490206.1 cyclic lactone autoinducer peptide AgrD -
  NZD48_RS04245 (NZD48_04245) - 902800..903363 (-) 564 WP_167694633.1 accessory gene regulator AgrB -
  NZD48_RS04250 (NZD48_04250) - 904017..904814 (-) 798 WP_259490209.1 carbon-nitrogen family hydrolase -
  NZD48_RS04255 (NZD48_04255) - 905022..906029 (+) 1008 WP_259490211.1 SdrH family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28228.36 Da        Isoelectric Point: 5.4121

>NTDB_id=726640 NZD48_RS04230 WP_039644708.1 900599..901321(-) (agrA) [Staphylococcus hyicus strain MM2101]
MKILICEDDPKQRERMESIIQNYIMIEEKPMEIEISTSDPYALLEASKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKLAAMDFIFKDDIDELRTRIIDCLETALKRLDLLTKDNTVETMELKQGSNSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLRELAQIDSRFFRCHNSFVLNRHNISHVDAKERIVYFKNDEFCYVSVRNIKKIKK

Nucleotide


Download         Length: 723 bp        

>NTDB_id=726640 NZD48_RS04230 WP_039644708.1 900599..901321(-) (agrA) [Staphylococcus hyicus strain MM2101]
TTGAAGATATTAATTTGTGAGGATGACCCTAAACAAAGAGAGCGAATGGAATCCATCATTCAAAATTATATTATGATTGA
AGAAAAGCCTATGGAAATTGAAATTTCTACAAGTGACCCATACGCGTTACTTGAGGCTTCAAAAAACATGACCGATATTG
GATGTTACTTTTTAGACATCCAATTAGAATCTGATATTAATGGCATTAAGCTTGGCAGTGAAATTAGAAAACATGATCCC
GTCGGTAATATTATTTTTGTGACAAGCCATAGTGAATTAACGTATTTGACATTCGTTTATAAACTTGCTGCTATGGATTT
TATATTTAAAGACGATATTGATGAATTACGAACGCGCATTATTGATTGTCTTGAAACTGCGCTCAAACGGTTGGATTTAC
TCACTAAAGATAACACTGTAGAAACAATGGAATTAAAACAAGGTAGTAATTCTGTATATGTCAACTATGATGATGTCATG
TTTTTTGAATCTTCACCTAAGTCACATCGACTCATAGCTCACTTAGATAATCGACAAATTGAGTTTTATGGTAATTTAAG
GGAACTTGCACAAATTGATAGTCGCTTTTTTAGATGCCATAACAGTTTTGTTTTAAATCGTCATAACATCTCTCATGTAG
ATGCTAAAGAGCGTATTGTTTATTTTAAAAATGATGAGTTTTGCTACGTGTCAGTTAGAAATATTAAAAAAATCAAGAAA
TAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

81.933

99.167

0.813