Detailed information    

insolico Bioinformatically predicted

Overview


Name   hexA   Type   Machinery gene
Locus tag   P1T45_RS11025 Genome accession   NZ_CP119427
Coordinates   2085374..2087929 (-) Length   851 a.a.
NCBI ID   WP_003108889.1    Uniprot ID   A0ABN0IP02
Organism   Streptococcus parauberis strain KSP45     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context


Location: 2080374..2092929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1T45_RS10990 (P1T45_10995) - 2080674..2081093 (+) 420 WP_003108900.1 DUF1492 domain-containing protein -
  P1T45_RS10995 (P1T45_11000) - 2081099..2081533 (+) 435 WP_003108899.1 DUF1492 domain-containing protein -
  P1T45_RS11000 (P1T45_11005) - 2081694..2082356 (-) 663 WP_003108897.1 hypothetical protein -
  P1T45_RS11005 (P1T45_11010) - 2082552..2083052 (-) 501 WP_308695475.1 hypothetical protein -
  P1T45_RS11010 (P1T45_11015) - 2083046..2083462 (-) 417 WP_308695478.1 hypothetical protein -
  P1T45_RS11015 (P1T45_11020) - 2084122..2084736 (+) 615 WP_003107889.1 CadD family cadmium resistance transporter -
  P1T45_RS11020 (P1T45_11025) - 2084752..2085081 (+) 330 WP_003108890.1 metalloregulator ArsR/SmtB family transcription factor -
  P1T45_RS11025 (P1T45_11030) hexA 2085374..2087929 (-) 2556 WP_003108889.1 DNA mismatch repair protein MutS Machinery gene
  P1T45_RS11030 (P1T45_11035) - 2087916..2088269 (-) 354 WP_003104802.1 YlbF family regulator -
  P1T45_RS11035 (P1T45_11040) argR 2088266..2088703 (-) 438 WP_003105697.1 arginine repressor -
  P1T45_RS11040 (P1T45_11045) argS 2088990..2090678 (+) 1689 WP_003107896.1 arginine--tRNA ligase -
  P1T45_RS11045 (P1T45_11050) - 2090714..2091592 (-) 879 WP_003102528.1 YitT family protein -
  P1T45_RS11050 (P1T45_11055) - 2091648..2092526 (-) 879 WP_003108886.1 YitT family protein -

Sequence


Protein


Download         Length: 851 a.a.        Molecular weight: 95498.18 Da        Isoelectric Point: 4.9392

>NTDB_id=726428 P1T45_RS11025 WP_003108889.1 2085374..2087929(-) (hexA) [Streptococcus parauberis strain KSP45]
MTEPKVSPGMQQYLDIKVNYPDAFLLFRMGDFYELFYDDAVKAAQILEIGLTSRNKNAENPIPMAGVPHHSAQQYIDVLI
EQGYKVAIAEQMEDPKKAVGVVKREVVQVITPGTVVDSAKPTSSNNFLVAIDYNGSNYGLAYMDLATGEFFVTALEDFAS
ICSEILNLKAKEVLVGYDLSGQEEEILVKQYNLLLSYEKEEIDDSKLLDNNLSIIEKMVASKLLAYVHHTQMRDLIHLQK
VVHYEINDYLQMSYATKSSLDLLENARTGKKHGSLYWLLDQTKTAMGMRLLRAWIDRPLISKEAVIQRQEIIQVLLDNFI
ERSDLSDSLKGVYDIERLSSRVSFGKVNPKDLLQLGHTLAQVPTIKAILESMDSPHLEGLIAGIDPILELEHLIQSAIDP
DAPATISEGNIIKTGFDKQLDHYRKVMKEGTGWIADIEMKERQASGINNLKIDYNKKDGYYFHVTNSNLSLVPDHFFRKA
TLKNSERYGTMELAKIEGQMLEAREESSTLEYDIFMQLRSRVENYIDRLQQLAKSIAAVDVLQSLAVVAEKNHYIRPSFT
DHQEINIINGRHAVVEKVMSVKEYIPNTIQFSQETNIQLITGPNMSGKSTYMRQLALTSIMAQLGSYVAADLAEIPIFDA
IFTRIGAADDLISGQSTFMVEMMEANQAIKGASPRSLILFDELGRGTATYDGMALAQSIIEFIHDHVGAKTMFATHYHEL
TDLSSRLKSLINVHVATLEENGEVTFLHKIAQGPADKSYGIHVAKIAGLPKELLQRADAILQKLENQSTQLTLVANAEES
QQAQTDKNQQLELFAPDAEENQVIEQLKAMDVINMTPMEAMTALYELKKNL

Nucleotide


Download         Length: 2556 bp        

>NTDB_id=726428 P1T45_RS11025 WP_003108889.1 2085374..2087929(-) (hexA) [Streptococcus parauberis strain KSP45]
ATGACAGAGCCTAAAGTTTCTCCTGGAATGCAACAGTATCTGGACATAAAAGTAAATTATCCAGATGCTTTTTTGCTTTT
TAGGATGGGTGACTTTTACGAATTATTTTATGACGATGCTGTTAAAGCAGCTCAAATATTAGAAATTGGTTTAACCAGTC
GCAACAAGAATGCTGAAAACCCAATACCCATGGCGGGAGTGCCCCACCATTCAGCACAACAATATATTGATGTTTTAATT
GAGCAAGGTTATAAAGTAGCCATTGCTGAACAAATGGAAGATCCTAAAAAAGCTGTCGGCGTTGTTAAACGTGAAGTGGT
TCAAGTGATTACTCCCGGAACTGTTGTCGATTCAGCTAAACCAACCAGTTCAAATAATTTCTTAGTTGCGATTGATTATA
ATGGTAGCAATTATGGTTTGGCTTATATGGACCTAGCTACTGGTGAATTCTTTGTGACAGCTCTGGAGGATTTCGCAAGT
ATTTGCAGTGAAATCTTAAATTTGAAAGCTAAAGAAGTTCTTGTTGGATATGACTTAAGTGGCCAAGAAGAAGAAATTTT
AGTAAAACAATATAATCTATTACTATCTTATGAAAAGGAAGAAATTGATGACAGTAAACTTTTAGATAATAATTTGTCAA
TCATTGAAAAAATGGTCGCAAGTAAGTTATTAGCTTATGTGCACCATACGCAAATGCGCGACCTAATTCACCTTCAAAAA
GTCGTTCACTATGAGATAAACGATTACTTACAAATGTCTTATGCTACTAAATCAAGCTTAGATCTACTAGAAAATGCTCG
AACCGGGAAAAAACATGGCAGTCTATACTGGTTATTAGATCAAACCAAGACAGCAATGGGGATGCGACTACTGCGTGCTT
GGATTGACCGTCCTCTAATTAGTAAAGAAGCTGTAATCCAGCGCCAAGAAATTATTCAAGTCTTACTTGATAATTTCATT
GAGCGTTCTGATTTAAGTGATAGCTTAAAAGGTGTCTATGACATTGAAAGACTATCAAGTCGTGTATCTTTCGGTAAGGT
TAATCCCAAAGACTTATTGCAACTAGGACATACCTTAGCTCAAGTGCCAACAATTAAAGCCATTTTGGAAAGTATGGATA
GTCCTCACTTAGAGGGACTCATTGCTGGTATCGACCCAATCCTTGAGTTAGAACACCTAATTCAATCAGCTATTGATCCA
GATGCGCCTGCAACAATTAGTGAAGGTAATATCATCAAAACTGGTTTTGACAAACAATTGGATCATTATCGGAAGGTCAT
GAAAGAAGGCACGGGCTGGATAGCAGATATTGAAATGAAAGAGCGCCAAGCAAGTGGTATTAACAATCTTAAAATTGATT
ACAATAAAAAAGATGGTTACTATTTCCATGTCACAAACTCTAATTTATCCCTTGTTCCGGACCATTTCTTTAGGAAAGCA
ACCTTAAAAAATTCTGAGCGTTATGGAACCATGGAATTAGCTAAAATTGAAGGACAAATGTTGGAAGCTAGAGAAGAATC
CTCAACTCTTGAGTATGATATCTTTATGCAATTGCGCTCACGAGTGGAAAATTATATTGATCGCCTTCAACAACTTGCCA
AATCAATTGCTGCCGTCGATGTCCTCCAAAGTTTAGCAGTTGTGGCTGAGAAAAACCATTACATCAGACCAAGTTTCACC
GACCATCAAGAAATTAATATCATTAATGGTCGCCATGCAGTGGTTGAAAAAGTGATGAGCGTCAAAGAATATATTCCCAA
CACCATTCAATTTAGTCAAGAAACGAATATCCAGCTCATTACAGGACCTAATATGAGTGGTAAATCAACTTATATGAGGC
AGTTAGCTTTAACCAGTATTATGGCCCAACTTGGTTCTTATGTGGCAGCAGACCTTGCAGAAATTCCCATTTTTGATGCT
ATCTTTACAAGAATTGGCGCAGCAGATGACCTGATTTCTGGACAATCGACATTCATGGTCGAAATGATGGAGGCCAACCA
AGCAATCAAAGGCGCAAGCCCACGGTCTTTAATTCTATTTGACGAATTAGGAAGAGGAACAGCTACTTATGATGGCATGG
CGCTAGCTCAATCAATTATTGAGTTTATCCATGACCACGTGGGAGCAAAAACAATGTTTGCCACCCATTATCATGAGTTG
ACAGACCTGTCAAGCCGCCTAAAAAGCCTGATAAATGTCCATGTCGCAACCTTGGAAGAAAATGGCGAAGTGACTTTCCT
TCATAAGATTGCCCAAGGACCGGCGGATAAATCCTACGGCATCCACGTGGCCAAAATTGCTGGGCTGCCAAAAGAACTCT
TACAACGTGCGGATGCCATTCTCCAAAAATTAGAGAACCAATCGACTCAGTTGACACTAGTTGCCAATGCAGAGGAATCC
CAACAAGCACAGACCGACAAGAATCAACAATTGGAACTCTTTGCCCCAGATGCTGAGGAGAACCAAGTCATTGAGCAATT
GAAAGCCATGGATGTTATCAATATGACCCCAATGGAGGCTATGACTGCCCTCTATGAACTGAAAAAGAACTTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexA Streptococcus pneumoniae R6

70.838

99.53

0.705

  mutS Pseudomonas stutzeri strain ATCC 17587

36.468

100

0.374