Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   P1T45_RS07395 Genome accession   NZ_CP119427
Coordinates   1361375..1363579 (-) Length   734 a.a.
NCBI ID   WP_308695359.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KSP45     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1356375..1368579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1T45_RS07365 (P1T45_07370) - 1356998..1357786 (-) 789 WP_003107147.1 Nif3-like dinuclear metal center hexameric protein -
  P1T45_RS07370 (P1T45_07375) - 1357776..1358459 (-) 684 WP_013794081.1 tRNA (adenine(22)-N(1))-methyltransferase TrmK -
  P1T45_RS07375 (P1T45_07380) - 1358555..1359202 (-) 648 WP_308695356.1 CPBP family intramembrane glutamic endopeptidase -
  P1T45_RS07380 (P1T45_07385) nth 1359334..1359980 (-) 647 Protein_1408 endonuclease III -
  P1T45_RS07385 (P1T45_07390) - 1359977..1360657 (-) 681 WP_003103839.1 DnaD domain-containing protein -
  P1T45_RS07390 (P1T45_07395) - 1360722..1361240 (-) 519 WP_003107150.1 adenine phosphoribosyltransferase -
  P1T45_RS07395 (P1T45_07400) recJ 1361375..1363579 (-) 2205 WP_308695359.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  P1T45_RS07400 (P1T45_07405) - 1363576..1364340 (-) 765 WP_003108254.1 SDR family oxidoreductase -
  P1T45_RS07405 (P1T45_07410) rnz 1364340..1365269 (-) 930 WP_003108253.1 ribonuclease Z -
  P1T45_RS07410 (P1T45_07415) - 1365284..1365928 (-) 645 WP_003105761.1 hypothetical protein -
  P1T45_RS07415 (P1T45_07420) hflX 1365921..1367159 (-) 1239 WP_100190758.1 GTPase HflX -
  P1T45_RS07420 (P1T45_07425) miaA 1367247..1368137 (-) 891 WP_003108250.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  P1T45_RS07425 (P1T45_07430) - 1368271..1368447 (+) 177 WP_003103674.1 DUF3042 family protein -

Sequence

Protein


Download         Length: 734 a.a.        Molecular weight: 82403.10 Da        Isoelectric Point: 4.5098

>NTDB_id=726388 P1T45_RS07395 WP_308695359.1 1361375..1363579(-) (recJ) [Streptococcus parauberis strain KSP45]
MIRAKYDWIINEKKPDDGFFKLAKKKVLVKTYVGSFMIEEFMMKKLDHFLRADLSDLNDPYLLNDMDKAVNRIRTAIENF
EQILVYGDYDADGMTSASIMKETLEMMGAEALIYLPNRFTDGYGPNESVYKYFIEQNQVSLIITVDNGVAGHEAIAYAQA
AGVDVIVTDHHSLPDQLPQAYAVIHPEHPDADYPFKKLAGCGVAFKLACALLETVPTEFLDLVAIGTIADMVSLTDENRV
LVKNGLKVLKMSERQGLQELMTISGVDLDAIDEDTVGFKIAPQLNALGRLDDPNPAIELLTGFDDEEAHDIALMINEKNE
ERKSLVQTIYNEAVEMVDLSKPVQVLAKAGWHPGVLGIVAGRILEEISQTVIVLNIENGVAKGSARSIEAINIFDALNHQ
RELMTAFGGHSGAAGMTLPAENIQALSDSITDYVVSEKIDTSQKNSLKIDSWLDLDHLSLEFLKELNILAPFGMDNKKPV
FALKDFTVVQARTMGADQSHLKLRIKNGSVETDVVAFNQGQYHLEYSQLADLELAVTLTVNSWNGNTSLQLMLVDARATK
SPQLFDFRARNMTLPNDISDIMVENDGQEVAIIDLPEDLEALRQQFQKRHFEAIYFKNNIDKPYYLSGSGSKDQFARLYK
TIYQFPEFDVRFKLSQLSDYLKIEKYLLVKMIQIFNELGFVAIDNGLMTVNKDASKRDIADSKTYQELQKLVKYQELMSL
GTPQEIYDFLVNED

Nucleotide


Download         Length: 2205 bp        

>NTDB_id=726388 P1T45_RS07395 WP_308695359.1 1361375..1363579(-) (recJ) [Streptococcus parauberis strain KSP45]
ATGATAAGAGCCAAATATGATTGGATTATAAATGAAAAGAAGCCAGATGATGGCTTCTTTAAACTAGCAAAGAAAAAAGT
CTTAGTCAAGACATATGTCGGCTCCTTTATGATAGAGGAATTCATGATGAAAAAATTAGACCATTTTCTTCGGGCCGACC
TTTCTGACTTAAACGATCCCTATTTATTAAATGATATGGACAAAGCGGTGAACAGAATTCGGACCGCCATTGAAAACTTT
GAACAGATTTTAGTTTATGGAGATTATGATGCTGATGGGATGACATCGGCATCCATCATGAAAGAAACACTTGAAATGAT
GGGAGCTGAGGCTTTAATCTACCTCCCCAACCGTTTTACAGATGGTTATGGTCCAAATGAAAGCGTCTATAAGTATTTCA
TTGAGCAAAACCAAGTTAGTTTAATTATTACAGTTGATAATGGGGTTGCGGGTCACGAGGCCATTGCTTACGCGCAAGCA
GCAGGTGTTGATGTGATTGTCACGGACCATCACTCTTTACCTGATCAATTACCACAAGCTTACGCAGTTATTCACCCAGA
ACATCCAGATGCTGACTATCCTTTTAAAAAATTAGCCGGCTGTGGCGTTGCTTTTAAACTGGCCTGCGCCCTGCTAGAAA
CAGTTCCAACTGAATTTCTGGATTTAGTGGCTATTGGTACTATTGCGGATATGGTTTCCTTAACGGATGAAAATCGCGTT
TTAGTAAAGAATGGCTTGAAAGTCCTAAAAATGAGTGAACGGCAAGGTTTACAAGAATTAATGACTATTTCAGGAGTTGA
TTTAGACGCTATTGATGAGGATACTGTTGGTTTTAAAATTGCCCCGCAATTAAATGCTCTAGGTCGCTTAGATGATCCTA
ATCCAGCAATTGAACTCTTGACTGGATTTGATGATGAAGAAGCCCATGACATTGCCCTCATGATTAATGAAAAAAACGAA
GAGCGTAAAAGCTTGGTTCAAACTATTTATAATGAAGCTGTTGAGATGGTTGACTTAAGTAAACCAGTTCAAGTTCTGGC
TAAGGCCGGCTGGCATCCTGGTGTACTTGGGATTGTTGCTGGGAGAATTCTTGAAGAAATCAGTCAAACAGTTATCGTCT
TGAATATTGAAAATGGGGTTGCTAAAGGCTCTGCTCGCTCAATAGAGGCTATTAATATATTTGATGCCTTAAATCATCAA
CGAGAATTGATGACTGCTTTTGGTGGTCACAGTGGTGCAGCTGGGATGACCTTACCAGCTGAAAATATTCAAGCTTTATC
AGATTCCATAACTGATTACGTTGTCTCTGAAAAGATTGATACAAGTCAAAAAAATAGTTTAAAAATTGATAGTTGGTTAG
ATCTTGATCACTTGAGTTTGGAATTCTTGAAAGAATTGAATATCTTAGCTCCATTTGGCATGGACAATAAAAAACCTGTT
TTTGCTCTCAAAGATTTCACAGTTGTTCAAGCACGGACTATGGGTGCTGATCAAAGTCACTTGAAGCTCCGGATAAAAAA
TGGTTCAGTTGAAACTGATGTTGTTGCCTTTAATCAAGGACAATATCATTTAGAATATAGTCAACTGGCTGATTTAGAAT
TGGCCGTGACTTTGACAGTTAATTCTTGGAATGGAAACACCAGTCTTCAGCTTATGTTAGTCGATGCCAGGGCTACCAAA
AGTCCGCAATTATTTGATTTCAGGGCTAGAAATATGACTTTGCCGAATGATATTTCAGATATCATGGTGGAAAATGATGG
TCAGGAAGTAGCTATTATTGATTTGCCAGAGGATTTGGAGGCTTTGCGCCAGCAATTCCAAAAGAGACATTTTGAAGCTA
TTTACTTCAAAAATAATATTGATAAGCCTTATTATCTTTCCGGTTCTGGTAGTAAGGATCAGTTTGCAAGATTATATAAA
ACGATTTACCAATTTCCGGAATTTGATGTTCGTTTTAAATTAAGTCAGTTAAGTGATTACTTGAAAATTGAAAAATATCT
TTTAGTTAAAATGATTCAAATTTTTAATGAATTAGGTTTTGTTGCAATTGATAATGGTTTAATGACGGTTAATAAGGATG
CATCAAAACGTGACATCGCGGATAGTAAAACTTATCAAGAATTACAAAAACTAGTTAAGTATCAAGAGCTAATGTCACTT
GGAACACCGCAAGAAATTTATGATTTTTTGGTTAATGAAGATTAA

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(316-432)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(584-726)

RecJ OB domain (RecJ_OB)

(449-555)

DHH family (DHH)

(82-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

61.86

100

0.625
  recJ Bacillus subtilis subsp. subtilis str. 168

35.964

100

0.379