Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NYR30_RS06405 Genome accession   NZ_CP103875
Coordinates   1357873..1358826 (-) Length   317 a.a.
NCBI ID   WP_302502370.1    Uniprot ID   -
Organism   Gallibacterium salpingitidis strain FC22     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1352873..1363826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR30_RS06380 (NYR30_06380) - 1353089..1354534 (-) 1446 WP_302502364.1 surface lipoprotein assembly modifier -
  NYR30_RS06385 (NYR30_06385) - 1354597..1354926 (-) 330 WP_302502365.1 hypothetical protein -
  NYR30_RS06390 (NYR30_06390) - 1355207..1356124 (-) 918 WP_066111883.1 siderophore ABC transporter substrate-binding protein -
  NYR30_RS06395 (NYR30_06395) - 1356163..1356924 (-) 762 WP_302502366.1 ABC transporter ATP-binding protein -
  NYR30_RS06400 (NYR30_06400) - 1356915..1357880 (-) 966 WP_302502368.1 iron chelate uptake ABC transporter family permease subunit -
  NYR30_RS06405 (NYR30_06405) ceuB 1357873..1358826 (-) 954 WP_302502370.1 ABC transporter permease Machinery gene
  NYR30_RS06410 (NYR30_06410) modA 1359035..1359793 (-) 759 WP_302502372.1 molybdate ABC transporter substrate-binding protein -
  NYR30_RS06415 (NYR30_06415) modC 1359943..1361010 (-) 1068 WP_302502374.1 molybdenum ABC transporter ATP-binding protein -
  NYR30_RS06420 (NYR30_06420) modB 1361003..1361722 (-) 720 WP_066111893.1 molybdate ABC transporter permease subunit -
  NYR30_RS06425 (NYR30_06425) - 1361753..1362523 (-) 771 WP_066111895.1 ABC transporter permease -
  NYR30_RS06430 (NYR30_06430) - 1362525..1363466 (-) 942 WP_302502376.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34708.78 Da        Isoelectric Point: 9.2486

>NTDB_id=726339 NYR30_RS06405 WP_302502370.1 1357873..1358826(-) (ceuB) [Gallibacterium salpingitidis strain FC22]
MIQRRYLLLVLVVLSFSSLLIGVSSVTLTGLLAFDTEQWQVLMISRVPRLISILIAGASLSICGLVMQQLSRNRFVSPTT
AGTMDCARLGVLLAILFFPNASMLLKSAVAIVAAFAGSLLFMTLLSKLKFTDMIFVPLVGIMFGNIISSITAFIAYQQDL
LQNLSAWLQGDFSLIMSGRYEMLYISIPTLLLAYIFAQRFSIVGMGEEFATNLGLNYKQVLYLGLAIVSIVSAIVIVTVG
VIPFLGLIVPNIVTLYLGDNLRKTLSHTAILGAIFVLCCDILGRVIIYPYEISINAVVGVFGSAIFLYLLFQRYRNA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=726339 NYR30_RS06405 WP_302502370.1 1357873..1358826(-) (ceuB) [Gallibacterium salpingitidis strain FC22]
ATGATTCAGCGACGATATTTGTTGTTAGTTTTGGTAGTGTTATCGTTCTCTTCATTACTCATTGGCGTTAGTTCAGTTAC
CTTAACTGGTTTGCTTGCTTTTGATACTGAACAGTGGCAAGTGTTAATGATCAGTCGTGTTCCTCGTCTAATCAGTATTT
TAATTGCAGGTGCTAGTCTTAGTATTTGTGGCTTAGTTATGCAGCAATTAAGCCGTAATCGTTTCGTTTCACCGACTACG
GCAGGAACGATGGATTGTGCTAGATTAGGCGTGTTATTGGCGATTTTGTTTTTTCCAAATGCTTCAATGTTATTGAAATC
CGCAGTGGCGATTGTTGCTGCTTTTGCTGGTTCATTGCTATTTATGACATTACTGTCAAAACTCAAATTTACCGATATGA
TTTTTGTACCGCTAGTCGGTATTATGTTTGGCAATATTATTAGTTCGATCACTGCTTTTATCGCTTATCAACAAGATCTG
TTACAAAATTTATCTGCGTGGCTGCAAGGGGATTTTTCATTGATTATGAGTGGTCGCTATGAAATGTTGTATATCAGTAT
TCCCACTTTGTTGCTGGCTTATATTTTTGCTCAACGTTTTTCTATTGTAGGAATGGGAGAAGAATTTGCGACTAATCTAG
GTTTGAATTATAAGCAAGTGCTTTATCTAGGTTTAGCGATAGTATCTATTGTTTCTGCGATTGTTATTGTCACCGTAGGC
GTTATTCCATTTTTAGGTTTAATCGTACCTAATATTGTTACGCTTTATTTAGGAGATAATCTGCGTAAAACGCTCTCACA
TACAGCGATTCTCGGCGCAATTTTTGTCTTATGTTGCGATATTTTAGGGCGTGTCATTATCTATCCATATGAAATTTCTA
TTAATGCGGTAGTTGGTGTTTTTGGCAGTGCAATTTTCCTCTATTTATTATTTCAAAGGTATCGTAATGCGTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(11-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.438

98.738

0.508