Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NYR19_RS05655 Genome accession   NZ_CP103874
Coordinates   1198675..1199628 (+) Length   317 a.a.
NCBI ID   WP_302509390.1    Uniprot ID   -
Organism   Gallibacterium anatis strain TH22     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1193675..1204628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR19_RS05630 (NYR19_05630) - 1194162..1195103 (+) 942 WP_302509170.1 ABC transporter ATP-binding protein -
  NYR19_RS05635 (NYR19_05635) - 1195104..1195874 (+) 771 WP_302509172.1 ABC transporter permease -
  NYR19_RS05640 (NYR19_05640) modB 1195900..1196616 (+) 717 WP_302509174.1 molybdate ABC transporter permease subunit -
  NYR19_RS05645 (NYR19_05645) modC 1196609..1197664 (+) 1056 WP_302509175.1 molybdenum ABC transporter ATP-binding protein -
  NYR19_RS05650 (NYR19_05650) modA 1197709..1198467 (+) 759 WP_021462204.1 molybdate ABC transporter substrate-binding protein -
  NYR19_RS05655 (NYR19_05655) ceuB 1198675..1199628 (+) 954 WP_302509390.1 ABC transporter permease Machinery gene
  NYR19_RS05660 (NYR19_05660) - 1199621..1200586 (+) 966 WP_302509177.1 iron chelate uptake ABC transporter family permease subunit -
  NYR19_RS05665 (NYR19_05665) - 1200577..1201338 (+) 762 WP_013745077.1 ABC transporter ATP-binding protein -
  NYR19_RS05670 (NYR19_05670) - 1201369..1202277 (+) 909 WP_039147919.1 siderophore ABC transporter substrate-binding protein -
  NYR19_RS05675 (NYR19_05675) - 1202392..1204314 (+) 1923 WP_302509180.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34730.81 Da        Isoelectric Point: 8.9889

>NTDB_id=726322 NYR19_RS05655 WP_302509390.1 1198675..1199628(+) (ceuB) [Gallibacterium anatis strain TH22]
MIQRRYLLLLLAVLSITSLLIGVSSVSISGLLQFDAEQWQILLISRIPRLVSILIAGAGLSICGLIMQQLSRNRFVSPTT
AGTMDCARLGVLLAILCFPDASMLLKSAIAIIAAFAGSLLFMILLSKLKFTDVIFVPLVGIMFGNIISSMTAFIAYQQDL
LQNLSAWLQGDFSLIMSGRYEMLYISIPTILFAYIYAQRFSIIGMGEEFATNLGLNYKQVLYLGLAIVSIVSSIVIVTVG
VIPFLGLIIPNIVALYLGDNLRNTLSHTALLGAIFVLFCDILGRIVIYPYEISINAVVGVFGSAIFLYLLFKRYRNA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=726322 NYR19_RS05655 WP_302509390.1 1198675..1199628(+) (ceuB) [Gallibacterium anatis strain TH22]
ATGATTCAACGACGATATCTGTTGTTATTATTGGCAGTATTATCAATTACTTCTTTATTAATCGGTGTGAGTTCCGTTTC
TATCAGCGGTTTACTACAATTTGATGCCGAACAGTGGCAAATTTTATTGATCAGCCGTATTCCTCGTTTAGTGAGCATTT
TGATTGCCGGTGCCGGTTTAAGTATTTGTGGCTTAATTATGCAACAACTTAGTCGTAATCGCTTTGTTTCACCAACCACC
GCCGGAACGATGGATTGTGCGCGATTAGGCGTGTTATTAGCTATTCTTTGCTTTCCTGATGCTTCAATGTTATTAAAATC
GGCTATTGCAATTATTGCTGCATTTGCCGGTTCATTATTATTTATGATTTTATTGTCAAAACTAAAATTTACCGATGTTA
TTTTTGTGCCGCTAGTTGGCATTATGTTTGGCAATATTATTAGTTCTATGACTGCTTTTATCGCCTATCAACAAGACCTA
TTACAAAATTTATCTGCTTGGTTACAAGGTGATTTTTCTTTGATTATGAGTGGAAGATATGAAATGCTTTATATCAGCAT
ACCAACAATATTATTTGCTTATATTTATGCACAACGTTTTTCCATTATTGGAATGGGAGAAGAATTTGCCACTAATCTAG
GATTAAATTATAAACAGGTACTTTATTTAGGGTTGGCTATTGTTTCTATTGTATCGTCAATTGTTATTGTTACCGTAGGA
GTCATTCCTTTTTTAGGATTAATTATCCCAAATATTGTCGCTTTATATTTAGGAGATAATTTACGCAATACTTTGTCGCA
TACAGCATTATTAGGTGCTATTTTTGTATTATTTTGCGATATTCTTGGACGCATTGTGATTTATCCTTATGAAATTTCGA
TTAATGCCGTAGTTGGCGTTTTTGGTAGTGCTATTTTCCTCTATTTATTGTTTAAAAGGTATCGTAATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.074

97.476

0.517