Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   NY669_RS21805 Genome accession   NZ_CP103872
Coordinates   4864271..4865761 (+) Length   496 a.a.
NCBI ID   WP_259433274.1    Uniprot ID   A0AAE4GDD1
Organism   Herbaspirillum huttiense strain ZXN111     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4859271..4870761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NY669_RS21780 (NY669_21780) - 4860509..4861537 (+) 1029 WP_039784050.1 SIS domain-containing protein -
  NY669_RS21785 (NY669_21785) - 4861537..4862091 (+) 555 WP_034331440.1 HAD family hydrolase -
  NY669_RS21790 (NY669_21790) lptC 4862088..4862696 (+) 609 WP_034331443.1 LPS export ABC transporter periplasmic protein LptC -
  NY669_RS21795 (NY669_21795) lptA 4862748..4863386 (+) 639 WP_034331445.1 lipopolysaccharide transport periplasmic protein LptA -
  NY669_RS21800 (NY669_21800) lptB 4863389..4864132 (+) 744 WP_034331447.1 LPS export ABC transporter ATP-binding protein -
  NY669_RS21805 (NY669_21805) rpoN/rpoN1 4864271..4865761 (+) 1491 WP_259433274.1 RNA polymerase factor sigma-54 Machinery gene
  NY669_RS21810 (NY669_21810) hpf 4865914..4866276 (+) 363 WP_034331451.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  NY669_RS21815 (NY669_21815) grxD 4866647..4866958 (+) 312 WP_039784040.1 Grx4 family monothiol glutaredoxin -
  NY669_RS21820 (NY669_21820) - 4866981..4867583 (+) 603 WP_034331455.1 UbiX family flavin prenyltransferase -
  NY669_RS21825 (NY669_21825) - 4867598..4867996 (+) 399 WP_259433275.1 type II toxin-antitoxin system HigA family antitoxin -
  NY669_RS21830 (NY669_21830) - 4868080..4868838 (-) 759 WP_034331459.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 55131.66 Da        Isoelectric Point: 5.1963

>NTDB_id=726305 NY669_RS21805 WP_259433274.1 4864271..4865761(+) (rpoN/rpoN1) [Herbaspirillum huttiense strain ZXN111]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQILSDNPLLERLDDALDNSVRLLADGAVSSSPSSGVAETSHE
GSGEAAPVASDGDSSFDYQDNAPEAGVTGDADWSFDDVARSGKSPDDDDARPQLEAHELTLREHLLEQIRVTARTLRDRA
LLELLTDALDESGYLEEPLEDIHARLPEELGIDMEELSISLKLLQSLDPAGVGARSAGECLALQIRRLPKIPFVTRKLAL
RIVEDYLPLFAQRDFNKIKKALDCDDEDLREAQAVIRQCRPHPGAEFARDASDYVVPDVIVKQTKNGWQVMLNHEVMPKL
RVNAMYASALKQAKGEGSLSSQLQEAKWLIKNMRQRFDTILRVAQAIVERQRNFFSHGAVAMRPLVLREIADTLGLHEST
ISRVTTQKYMLTPHGMFELKYFFGSHVATETGGEASSTAIRALIKQLIGAENPQTPLSDSKIADMLAEQGMVVARRTVAK
YREVLKIPPVNLRKSL

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=726305 NY669_RS21805 WP_259433274.1 4864271..4865761(+) (rpoN/rpoN1) [Herbaspirillum huttiense strain ZXN111]
ATGAAACAGTCGCTCCAGTTACGTACCTCGCAGCACCTCGCATTGACGCCGCAACTGCAGCAGTCGATCAGACTGTTGCA
ACTGTCGACGCTGGAACTGCACCAGGAACTGGAACAGATCCTCTCCGACAATCCCCTGCTGGAACGCCTCGACGACGCGC
TCGACAATTCGGTACGTCTGCTGGCCGATGGCGCGGTCTCCAGTTCGCCCTCCAGCGGCGTTGCGGAAACCAGTCACGAA
GGCAGCGGCGAAGCGGCACCGGTCGCCAGCGATGGCGATTCCAGCTTCGACTATCAGGACAACGCGCCGGAGGCCGGTGT
CACGGGGGATGCCGACTGGAGCTTCGACGACGTCGCGCGCAGCGGCAAGTCGCCAGACGATGATGATGCCCGCCCGCAAC
TCGAAGCGCACGAACTGACCCTGCGCGAACACCTGCTGGAACAGATCCGCGTGACCGCACGCACCCTGCGCGATCGTGCG
CTGCTGGAGCTGCTCACCGATGCGCTCGACGAGAGCGGCTATCTGGAAGAGCCGCTGGAAGACATCCACGCACGCCTGCC
CGAAGAGCTGGGCATCGACATGGAAGAGCTGTCGATTTCGCTCAAGCTGCTGCAGAGCCTGGACCCGGCGGGTGTCGGTG
CACGCAGTGCCGGCGAATGCCTGGCCCTGCAGATCCGCCGCCTGCCCAAGATCCCCTTCGTGACGCGCAAGCTGGCCTTG
AGGATCGTGGAGGATTACCTGCCGCTGTTTGCGCAACGCGATTTCAACAAGATCAAGAAGGCCCTGGATTGCGATGACGA
AGACCTGCGTGAGGCGCAGGCCGTGATCCGCCAGTGCCGTCCGCATCCGGGTGCGGAATTCGCGCGCGATGCCTCGGACT
ATGTGGTGCCGGACGTGATTGTCAAGCAGACAAAGAACGGCTGGCAGGTCATGCTCAACCATGAGGTCATGCCCAAGCTG
CGCGTCAATGCGATGTATGCCAGTGCATTGAAGCAAGCCAAGGGAGAAGGTTCCCTGTCGTCGCAGTTGCAGGAAGCCAA
GTGGCTCATCAAGAACATGCGGCAACGTTTCGATACAATTTTGCGCGTCGCGCAGGCGATTGTGGAACGTCAAAGAAACT
TCTTTTCACATGGGGCAGTGGCCATGCGCCCCCTTGTGCTGCGTGAAATTGCTGATACACTGGGTCTACACGAGAGCACC
ATCTCTCGCGTGACGACTCAGAAATACATGCTCACTCCGCATGGAATGTTTGAGTTGAAATACTTCTTCGGTAGCCATGT
CGCGACTGAAACCGGAGGTGAAGCTTCCTCCACCGCGATACGGGCGCTGATCAAACAGTTGATAGGAGCCGAGAACCCGC
AGACCCCATTATCCGATAGCAAGATTGCGGATATGCTGGCAGAACAAGGCATGGTGGTCGCGCGACGCACAGTCGCCAAA
TACCGCGAAGTGTTGAAGATTCCGCCGGTCAATCTCCGCAAGTCCCTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(135-326)

Sigma-54, DNA binding domain (Sigma54_DBD)

(339-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

58.661

100

0.601