Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PX811_RS16725 Genome accession   NZ_CP119404
Coordinates   3426543..3427148 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain MRE162 substr. UK     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3421543..3432148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PX811_RS16705 (PX811_003340) aes 3421580..3422539 (+) 960 WP_275770957.1 acetyl esterase -
  PX811_RS16710 (PX811_003341) hemH 3422536..3423498 (-) 963 WP_001250088.1 ferrochelatase -
  PX811_RS16715 (PX811_003342) adk 3423734..3424378 (-) 645 WP_001220233.1 adenylate kinase -
  PX811_RS16720 (PX811_003343) htpG 3424559..3426433 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  PX811_RS16725 (PX811_003344) recR 3426543..3427148 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  PX811_RS16730 (PX811_003345) ybaB 3427148..3427477 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  PX811_RS16735 (PX811_003346) dnaX 3427530..3429461 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  PX811_RS16740 (PX811_003347) apt 3429590..3430141 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  PX811_RS16745 (PX811_003348) ybaN 3430294..3430671 (-) 378 WP_001188905.1 DUF454 family protein -
  PX811_RS16750 (PX811_003349) priC 3430741..3431268 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  PX811_RS16755 (PX811_003350) rsmS 3431282..3431443 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=726304 PX811_RS16725 WP_001195025.1 3426543..3427148(-) (recR) [Escherichia coli strain MRE162 substr. UK]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=726304 PX811_RS16725 WP_001195025.1 3426543..3427148(-) (recR) [Escherichia coli strain MRE162 substr. UK]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443