Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NYR52_RS09860 Genome accession   NZ_CP103866
Coordinates   2019155..2020972 (+) Length   605 a.a.
NCBI ID   WP_259435566.1    Uniprot ID   -
Organism   Laceyella sacchari strain FBKL4.014     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2014155..2025972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR52_RS09835 (NYR52_09835) - 2015544..2015843 (-) 300 WP_022738991.1 YlxQ family RNA-binding protein -
  NYR52_RS09840 (NYR52_09840) rnpM 2015836..2016114 (-) 279 WP_022738992.1 RNase P modulator RnpM -
  NYR52_RS09845 (NYR52_09845) nusA 2016136..2017260 (-) 1125 WP_132223671.1 transcription termination factor NusA -
  NYR52_RS09850 (NYR52_09850) rimP 2017284..2017745 (-) 462 WP_022738995.1 ribosome maturation factor RimP -
  NYR52_RS09855 (NYR52_09855) - 2018155..2019057 (+) 903 WP_132223674.1 DMT family transporter -
  NYR52_RS09860 (NYR52_09860) pepF 2019155..2020972 (+) 1818 WP_259435566.1 oligoendopeptidase F Regulator
  NYR52_RS09865 (NYR52_09865) msrB 2021035..2021448 (-) 414 Protein_1912 peptide-methionine (R)-S-oxide reductase MsrB -
  NYR52_RS09870 (NYR52_09870) - 2021686..2024109 (+) 2424 WP_246026972.1 penicillin acylase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69576.60 Da        Isoelectric Point: 6.0043

>NTDB_id=726264 NYR52_RS09860 WP_259435566.1 2019155..2020972(+) (pepF) [Laceyella sacchari strain FBKL4.014]
MSKQQNSKQLPHRSEVPVEYTWRLEDIFATDDLWNEEFDKVKALIPKAADFKGTLGDSAESLLRALKFRDELHMRLEQLY
TYAHMRYDQDTTNSFYQALDARAKSLFAEAGSALSFMTPELLSISEDKIKAFLAENSELRVYSHALEKLNKKRPHVLSEK
EEAILAQAADVLGASATTFGMLNNADLTFPTIVDEDGTPVQITHGRYIKLMESSDRRVRKEAFEGLYHTYDKFKNTFAST
LSGVVKKNSFYAKVRGYDSARHAALSNNHIPETVYDQLVNTVNEHLPLLHRYLEIRKRALGYEELHMYDIYTPLVPDAKM
KITYPEAQQKLLEGLAVMGDEYISILKEAYENRWVDVMENKGKRSGAYSSGSYSTNPYILMNWQDTVDNLFTLAHEFGHS
VHSYYSRKNQPYIYGDYTIFVAEVASTCNEALLNDYLMKHTTDKQQKLYLLNHYLDSFRGTVFRQTMFAEFEHTIYQKAQ
AGEALTPDLLTSLYYALNQKYHGEGMISDKEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILTEGKPAVDRYTEFL
KAGNSDYPIEVLKKAGVDMTTAEPIRLALKDFEEKLNELEQLLFT

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=726264 NYR52_RS09860 WP_259435566.1 2019155..2020972(+) (pepF) [Laceyella sacchari strain FBKL4.014]
ATGTCCAAGCAACAAAACAGCAAGCAACTGCCACATCGTTCGGAAGTGCCGGTGGAATACACTTGGCGTTTGGAAGATAT
TTTCGCAACCGACGACCTTTGGAACGAAGAGTTTGACAAGGTGAAAGCCTTGATACCCAAAGCTGCAGACTTCAAAGGGA
CATTGGGCGATTCAGCCGAATCCTTGTTGCGCGCGCTCAAGTTCAGGGATGAATTGCATATGCGCCTTGAACAATTGTAT
ACATACGCCCACATGCGGTATGACCAAGATACCACCAACTCCTTCTATCAAGCGCTTGATGCACGGGCAAAAAGCTTGTT
CGCAGAAGCGGGAAGCGCGCTCTCTTTTATGACACCCGAACTCCTTTCCATCAGCGAAGACAAAATCAAAGCGTTTCTCG
CGGAAAACAGTGAACTCCGCGTGTACAGCCACGCGTTGGAAAAGCTGAACAAAAAACGCCCGCATGTATTATCCGAAAAA
GAGGAAGCCATTTTGGCCCAAGCGGCTGATGTATTAGGTGCTTCCGCTACAACCTTTGGTATGTTAAACAACGCTGACCT
CACATTCCCAACGATCGTGGATGAAGACGGCACACCTGTACAAATCACACACGGCCGCTACATCAAACTGATGGAATCGA
GCGACCGGCGGGTGCGGAAAGAAGCATTTGAAGGCTTGTACCACACGTATGACAAATTTAAAAACACCTTCGCCAGCACC
CTGAGCGGAGTAGTCAAGAAAAACAGCTTCTACGCCAAGGTTCGCGGATACGATTCGGCCCGTCACGCCGCCCTGAGCAA
CAATCACATTCCAGAAACCGTGTATGACCAGCTCGTCAACACAGTGAATGAGCATTTGCCGCTTTTGCACCGCTATCTGG
AAATCCGCAAACGGGCATTGGGATATGAAGAACTGCACATGTATGACATCTACACCCCACTGGTGCCTGACGCGAAGATG
AAAATCACCTACCCCGAAGCACAGCAAAAATTGCTGGAAGGCCTGGCCGTCATGGGGGATGAATATATCTCCATCCTGAA
AGAAGCGTATGAAAACCGCTGGGTAGACGTGATGGAAAACAAGGGCAAACGCAGCGGCGCGTACTCCTCTGGCTCTTACA
GCACCAATCCTTACATCCTGATGAACTGGCAAGATACCGTCGACAACCTGTTCACCTTGGCTCACGAATTCGGGCATTCC
GTACACAGCTACTACAGCCGCAAAAATCAACCTTATATATACGGGGATTACACCATCTTTGTCGCTGAAGTCGCTTCAAC
CTGCAACGAGGCTCTGTTGAATGACTACTTGATGAAACACACCACCGACAAGCAACAAAAACTTTATCTTCTCAACCATT
ATCTCGACTCTTTCCGGGGCACTGTGTTCAGACAAACGATGTTCGCCGAGTTCGAGCATACCATCTACCAAAAGGCGCAA
GCCGGCGAGGCATTAACACCTGATCTGCTCACTTCGCTGTACTATGCACTCAATCAGAAATACCATGGCGAAGGAATGAT
CAGCGATAAGGAAATCGGCCTGGAATGGGCCCGCATCCCCCATTTTTACTACAATTATTACGTATACCAATACGCCACCG
GATTCAGCGCAGCCACCGCACTGTCCAAACAGATTTTGACTGAGGGCAAACCTGCCGTTGACCGCTACACAGAATTCCTC
AAAGCAGGCAACTCTGACTATCCGATCGAAGTGCTGAAGAAAGCAGGCGTTGACATGACGACTGCGGAACCAATTCGGTT
GGCGTTGAAAGACTTTGAAGAAAAACTGAATGAGCTGGAGCAACTCCTCTTTACTTGA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(210-588)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.493

97.851

0.484